| /dports/biology/mafft/mafft-7.267-without-extensions/core/ |
| H A D | tditeration.c | 251 RNApair ***grouprna1, RNApair ***grouprna2, in freelocalarrays() argument
282 free( grouprna1 ); // nakamimo? in freelocalarrays()
375 RNApair ***grouprna1, ***grouprna2; in athread() local
439 grouprna1 = grouprna2 = NULL; in athread()
524 grouprna1, grouprna2, in athread()
641 grouprna1, grouprna2, in athread()
686 grouprna1, grouprna2, in athread()
832 makegrouprna( grouprna1, singlerna, memlist[0] ); in athread()
1296 RNApair ***grouprna1, ***grouprna2; local
1311 grouprna1 = grouprna2 = NULL;
[all …]
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| H A D | tbfast.c | 556 RNApair ***grouprna1 = NULL, ***grouprna2 = NULL; in treebasethread() local
567 grouprna1 = (RNApair ***)calloc( njob, sizeof( RNApair ** ) ); in treebasethread()
572 grouprna1 = grouprna2 = NULL; in treebasethread()
638 if( grouprna1 ) free( grouprna1 ); // nakami ha? in treebasethread()
640 grouprna1 = grouprna2 = NULL; in treebasethread()
775 makegrouprna( grouprna1, singlerna, topol[l][0] ); in treebasethread()
936 RNApair ***grouprna1 = NULL, ***grouprna2 = NULL; in treebase() local
947 grouprna1 = grouprna2 = NULL; in treebase()
1103 makegrouprna( grouprna1, singlerna, topol[l][0] ); in treebase()
1262 if( grouprna1 ) free( grouprna1 ); // nakami ha? in treebase()
[all …]
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| H A D | rna.c | 330 …nseq2, char **seq1, char **seq2, double *eff1, double *eff2, RNApair ***grouprna1, RNApair ***grou… argument
400 mccaskillextract( oseq1, useq1, nseq1, pairprob1, grouprna1, sgapmap1, eff1 );
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| H A D | addsingle.c | 1172 RNApair ***grouprna1, ***grouprna2; in treebase() local
1176 grouprna1 = (RNApair ***)calloc( nseq, sizeof( RNApair ** ) ); in treebase()
1181 grouprna1 = grouprna2 = NULL; in treebase()
1351 makegrouprna( grouprna1, singlerna, topol[l][0] ); in treebase()
1397 …if( rnakozo ) imp_rna( clus1, clus2, mseq1, mseq2, effarr1, effarr2, grouprna1, grouprna2, NULL, N… in treebase()
1499 free( grouprna1 ); in treebase()
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| H A D | partSalignmm.c | 272 …nseq2, char **seq1, char **seq2, double *eff1, double *eff2, RNApair ***grouprna1, RNApair ***grou… in part_imp_rna() argument
274 …foldrna( nseq1, nseq2, seq1, seq2, eff1, eff2, grouprna1, grouprna2, impmtx, gapmap1, gapmap2, add… in part_imp_rna()
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| H A D | Salignmm.c | 73 …nseq2, char **seq1, char **seq2, double *eff1, double *eff2, RNApair ***grouprna1, RNApair ***grou… in imp_rna() argument
75 …foldrna( nseq1, nseq2, seq1, seq2, eff1, eff2, grouprna1, grouprna2, impmtx, gapmap1, gapmap2, pai… in imp_rna()
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| H A D | Dalignmm.c | 113 …nseq2, char **seq1, char **seq2, double *eff1, double *eff2, RNApair ***grouprna1, RNApair ***grou… in imp_rnaD() argument
115 …foldrna( nseq1, nseq2, seq1, seq2, eff1, eff2, grouprna1, grouprna2, impmtx, gapmap1, gapmap2, pai… in imp_rnaD()
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