Searched refs:gtrfreq (Results 1 – 1 of 1) sorted by relevance
| /dports/biology/fasttree/FastTree-2.1.10_5/ |
| H A D | FastTree-2.1.10.c | 932 transition_matrix_t *CreateGTR(double *gtrrates/*ac,ag,at,cg,ct,gt*/, double *gtrfreq/*ACGT*/);
1353 void SetMLGtr(/*IN/OUT*/NJ_t *NJ, /*OPTIONAL IN*/double *gtrfreq, /*OPTIONAL WRITE*/FILE *fpLog);
1670 double gtrfreq[4] = {0.25,0.25,0.25,0.25}; in main() local
1869 gtrfreq[i] = atof(argv[++iArg]); in main()
1870 sum += gtrfreq[i]; in main()
1871 if (gtrfreq[i] < 1e-5) { in main()
1881 gtrfreq[i] /= sum; in main()
2013 gtrfreq[0],gtrfreq[1],gtrfreq[2],gtrfreq[3]); in main()
2154 transmat = CreateGTR(gtrrates,gtrfreq); in main()
2332 SetMLGtr(/*IN/OUT*/NJ, bUseGtrFreq ? gtrfreq : NULL, fpLog); in main()
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