Searched refs:gwstate_ (Results 1 – 5 of 5) sorted by relevance
| /dports/biology/bowtie2/bowtie2-2.4.4/ |
| H A D | aligner_sw_driver.h | 310 gwstate_(GW_CAT) { } in SwDriver()
526 GroupWalkState gwstate_; // some per-thread state shared by all GroupWalks variable
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| H A D | aligner_seed2.h | 2133 DescentAlignmentSelector() : gwstate_(GW_CAT) { reset(); } in DescentAlignmentSelector()
2208 gwstate_, // GroupWalk state; scratch space in next()
2302 GroupWalkState gwstate_; variable
2343 DescentPartialAlignmentSelector() : gwstate_(GW_CAT) { reset(); } in DescentPartialAlignmentSelector()
2427 gwstate_, // GroupWalk state; scratch space in nextPartial()
2525 GroupWalkState gwstate_; variable
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| H A D | aligner_sw_driver.cpp | 931 gws_[i].advanceElement((TIndexOffU)elt, ebwtFw, ref, sa, gwstate_, wr, wlm, prm); in extendSeeds()
1632 gws_[i].advanceElement((TIndexOffU)elt, ebwtFw, ref, sa, gwstate_, wr, wlm, prm); in extendSeedsPaired()
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| /dports/biology/hisat2/hisat2-2.2.1/ |
| H A D | aligner_seed2.h | 2127 DescentAlignmentSelector() : gwstate_(GW_CAT) { reset(); } in DescentAlignmentSelector()
2202 gwstate_, // GroupWalk state; scratch space in next()
2296 GroupWalkState<index_t> gwstate_; variable
2328 DescentPartialAlignmentSelector() : gwstate_(GW_CAT) { reset(); } in DescentPartialAlignmentSelector()
2424 gwstate_, // GroupWalk state; scratch space in next()
2496 GroupWalkState<index_t> gwstate_; variable
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| H A D | aligner_sw_driver.h | 322 gwstate_(GW_CAT) { } in SwDriver()
538 GroupWalkState<index_t> gwstate_; // some per-thread state shared by all GroupWalks variable
1456 gws_[i].advanceElement((index_t)elt, gfmFw, ref, sa, gwstate_, wr, wlm, prm); in extendSeeds()
2161 gws_[i].advanceElement((index_t)elt, gfmFw, ref, sa, gwstate_, wr, wlm, prm); in extendSeedsPaired()
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