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/dports/biology/infernal/infernal-1.1.3/hmmer/src/
H A Dp7_gmxb.c11 P7_GMXB *gxb = NULL; in p7_gmxb_Create() local
15 gxb->dp = NULL; in p7_gmxb_Create()
17 gxb->bnd = bnd; in p7_gmxb_Create()
18 gxb->dalloc = 0; in p7_gmxb_Create()
19 gxb->xalloc = 0; in p7_gmxb_Create()
25 return gxb; in p7_gmxb_Create()
47 gxb->bnd = bnd; in p7_gmxb_Reinit()
65 if (gxb) in p7_gmxb_Destroy()
67 if (gxb->dp) free(gxb->dp); in p7_gmxb_Destroy()
68 if (gxb->xmx) free(gxb->xmx); in p7_gmxb_Destroy()
[all …]
H A Dp7_gmxb.h19 extern int p7_gmxb_Reinit(P7_GMXB *gxb, P7_GBANDS *bnd);
20 extern int p7_gmxb_Reuse(P7_GMXB *gxb);
21 extern void p7_gmxb_Destroy(P7_GMXB *gxb);
22 extern int p7_gmxb_Dump(FILE *ofp, P7_GMXB *gxb, int flags);
24 extern int p7_GForwardBanded(const ESL_DSQ *dsq, int L, const P7_PROFILE *gm, P7_GMXB *gxb, float *…
/dports/biology/hmmer/hmmer-3.3/src/
H A Dp7_gmxb.c11 P7_GMXB *gxb = NULL; in p7_gmxb_Create() local
15 gxb->dp = NULL; in p7_gmxb_Create()
17 gxb->bnd = bnd; in p7_gmxb_Create()
18 gxb->dalloc = 0; in p7_gmxb_Create()
19 gxb->xalloc = 0; in p7_gmxb_Create()
25 return gxb; in p7_gmxb_Create()
47 gxb->bnd = bnd; in p7_gmxb_Reinit()
65 if (gxb) in p7_gmxb_Destroy()
67 if (gxb->dp) free(gxb->dp); in p7_gmxb_Destroy()
68 if (gxb->xmx) free(gxb->xmx); in p7_gmxb_Destroy()
[all …]
H A Dp7_gmxb.h19 extern int p7_gmxb_Reinit(P7_GMXB *gxb, P7_GBANDS *bnd);
20 extern int p7_gmxb_Reuse(P7_GMXB *gxb);
21 extern void p7_gmxb_Destroy(P7_GMXB *gxb);
22 extern int p7_gmxb_Dump(FILE *ofp, P7_GMXB *gxb, int flags);
24 extern int p7_GForwardBanded(const ESL_DSQ *dsq, int L, const P7_PROFILE *gm, P7_GMXB *gxb, float *…
/dports/emulators/qemu5/qemu-5.2.0/roms/u-boot/board/amlogic/odroid-c2/
H A DREADME.nanopi-k248 > sed -i 's/arm-linux-/arm-none-eabi-/' arch/arm/cpu/armv8/gxb/firmware/scp_task/Makefile
56 > cp $FIPDIR/gxb/bl2.bin fip/
57 > cp $FIPDIR/gxb/acs.bin fip/
58 > cp $FIPDIR/gxb/bl21.bin fip/
59 > cp $FIPDIR/gxb/bl30.bin fip/
60 > cp $FIPDIR/gxb/bl301.bin fip/
61 > cp $FIPDIR/gxb/bl31.img fip/
92 > $FIPDIR/gxb/aml_encrypt_gxb --bootsig \
/dports/sysutils/u-boot-olinuxino-lime/u-boot-2021.07/doc/board/amlogic/
H A Dnanopi-k2.rst48 $ sed -i 's/arm-linux-/arm-none-eabi-/' arch/arm/cpu/armv8/gxb/firmware/scp_task/Makefile
59 $ cp $FIPDIR/gxb/bl2.bin fip/
60 $ cp $FIPDIR/gxb/acs.bin fip/
61 $ cp $FIPDIR/gxb/bl21.bin fip/
62 $ cp $FIPDIR/gxb/bl30.bin fip/
63 $ cp $FIPDIR/gxb/bl301.bin fip/
64 $ cp $FIPDIR/gxb/bl31.img fip/
95 $ $FIPDIR/gxb/aml_encrypt_gxb --bootsig \
/dports/sysutils/u-boot-olinuxino-lime2-emmc/u-boot-2021.07/doc/board/amlogic/
H A Dnanopi-k2.rst48 $ sed -i 's/arm-linux-/arm-none-eabi-/' arch/arm/cpu/armv8/gxb/firmware/scp_task/Makefile
59 $ cp $FIPDIR/gxb/bl2.bin fip/
60 $ cp $FIPDIR/gxb/acs.bin fip/
61 $ cp $FIPDIR/gxb/bl21.bin fip/
62 $ cp $FIPDIR/gxb/bl30.bin fip/
63 $ cp $FIPDIR/gxb/bl301.bin fip/
64 $ cp $FIPDIR/gxb/bl31.img fip/
95 $ $FIPDIR/gxb/aml_encrypt_gxb --bootsig \
/dports/sysutils/u-boot-olinuxino-lime2/u-boot-2021.07/doc/board/amlogic/
H A Dnanopi-k2.rst48 $ sed -i 's/arm-linux-/arm-none-eabi-/' arch/arm/cpu/armv8/gxb/firmware/scp_task/Makefile
59 $ cp $FIPDIR/gxb/bl2.bin fip/
60 $ cp $FIPDIR/gxb/acs.bin fip/
61 $ cp $FIPDIR/gxb/bl21.bin fip/
62 $ cp $FIPDIR/gxb/bl30.bin fip/
63 $ cp $FIPDIR/gxb/bl301.bin fip/
64 $ cp $FIPDIR/gxb/bl31.img fip/
95 $ $FIPDIR/gxb/aml_encrypt_gxb --bootsig \
/dports/sysutils/u-boot-cubox-hummingboard/u-boot-2021.07/doc/board/amlogic/
H A Dnanopi-k2.rst48 $ sed -i 's/arm-linux-/arm-none-eabi-/' arch/arm/cpu/armv8/gxb/firmware/scp_task/Makefile
59 $ cp $FIPDIR/gxb/bl2.bin fip/
60 $ cp $FIPDIR/gxb/acs.bin fip/
61 $ cp $FIPDIR/gxb/bl21.bin fip/
62 $ cp $FIPDIR/gxb/bl30.bin fip/
63 $ cp $FIPDIR/gxb/bl301.bin fip/
64 $ cp $FIPDIR/gxb/bl31.img fip/
95 $ $FIPDIR/gxb/aml_encrypt_gxb --bootsig \
/dports/sysutils/u-boot-cubieboard2/u-boot-2021.07/doc/board/amlogic/
H A Dnanopi-k2.rst48 $ sed -i 's/arm-linux-/arm-none-eabi-/' arch/arm/cpu/armv8/gxb/firmware/scp_task/Makefile
59 $ cp $FIPDIR/gxb/bl2.bin fip/
60 $ cp $FIPDIR/gxb/acs.bin fip/
61 $ cp $FIPDIR/gxb/bl21.bin fip/
62 $ cp $FIPDIR/gxb/bl30.bin fip/
63 $ cp $FIPDIR/gxb/bl301.bin fip/
64 $ cp $FIPDIR/gxb/bl31.img fip/
95 $ $FIPDIR/gxb/aml_encrypt_gxb --bootsig \
/dports/sysutils/u-boot-cubieboard/u-boot-2021.07/doc/board/amlogic/
H A Dnanopi-k2.rst48 $ sed -i 's/arm-linux-/arm-none-eabi-/' arch/arm/cpu/armv8/gxb/firmware/scp_task/Makefile
59 $ cp $FIPDIR/gxb/bl2.bin fip/
60 $ cp $FIPDIR/gxb/acs.bin fip/
61 $ cp $FIPDIR/gxb/bl21.bin fip/
62 $ cp $FIPDIR/gxb/bl30.bin fip/
63 $ cp $FIPDIR/gxb/bl301.bin fip/
64 $ cp $FIPDIR/gxb/bl31.img fip/
95 $ $FIPDIR/gxb/aml_encrypt_gxb --bootsig \
/dports/sysutils/u-boot-firefly-rk3399/u-boot-2021.07/doc/board/amlogic/
H A Dnanopi-k2.rst48 $ sed -i 's/arm-linux-/arm-none-eabi-/' arch/arm/cpu/armv8/gxb/firmware/scp_task/Makefile
59 $ cp $FIPDIR/gxb/bl2.bin fip/
60 $ cp $FIPDIR/gxb/acs.bin fip/
61 $ cp $FIPDIR/gxb/bl21.bin fip/
62 $ cp $FIPDIR/gxb/bl30.bin fip/
63 $ cp $FIPDIR/gxb/bl301.bin fip/
64 $ cp $FIPDIR/gxb/bl31.img fip/
95 $ $FIPDIR/gxb/aml_encrypt_gxb --bootsig \
/dports/sysutils/u-boot-a13-olinuxino/u-boot-2021.07/doc/board/amlogic/
H A Dnanopi-k2.rst48 $ sed -i 's/arm-linux-/arm-none-eabi-/' arch/arm/cpu/armv8/gxb/firmware/scp_task/Makefile
59 $ cp $FIPDIR/gxb/bl2.bin fip/
60 $ cp $FIPDIR/gxb/acs.bin fip/
61 $ cp $FIPDIR/gxb/bl21.bin fip/
62 $ cp $FIPDIR/gxb/bl30.bin fip/
63 $ cp $FIPDIR/gxb/bl301.bin fip/
64 $ cp $FIPDIR/gxb/bl31.img fip/
95 $ $FIPDIR/gxb/aml_encrypt_gxb --bootsig \
/dports/sysutils/u-boot-sinovoip-bpi-m3/u-boot-2021.07/doc/board/amlogic/
H A Dnanopi-k2.rst48 $ sed -i 's/arm-linux-/arm-none-eabi-/' arch/arm/cpu/armv8/gxb/firmware/scp_task/Makefile
59 $ cp $FIPDIR/gxb/bl2.bin fip/
60 $ cp $FIPDIR/gxb/acs.bin fip/
61 $ cp $FIPDIR/gxb/bl21.bin fip/
62 $ cp $FIPDIR/gxb/bl30.bin fip/
63 $ cp $FIPDIR/gxb/bl301.bin fip/
64 $ cp $FIPDIR/gxb/bl31.img fip/
95 $ $FIPDIR/gxb/aml_encrypt_gxb --bootsig \
/dports/sysutils/u-boot-sopine/u-boot-2021.07/doc/board/amlogic/
H A Dnanopi-k2.rst48 $ sed -i 's/arm-linux-/arm-none-eabi-/' arch/arm/cpu/armv8/gxb/firmware/scp_task/Makefile
59 $ cp $FIPDIR/gxb/bl2.bin fip/
60 $ cp $FIPDIR/gxb/acs.bin fip/
61 $ cp $FIPDIR/gxb/bl21.bin fip/
62 $ cp $FIPDIR/gxb/bl30.bin fip/
63 $ cp $FIPDIR/gxb/bl301.bin fip/
64 $ cp $FIPDIR/gxb/bl31.img fip/
95 $ $FIPDIR/gxb/aml_encrypt_gxb --bootsig \
/dports/sysutils/u-boot-a64-olinuxino/u-boot-2021.07/doc/board/amlogic/
H A Dnanopi-k2.rst48 $ sed -i 's/arm-linux-/arm-none-eabi-/' arch/arm/cpu/armv8/gxb/firmware/scp_task/Makefile
59 $ cp $FIPDIR/gxb/bl2.bin fip/
60 $ cp $FIPDIR/gxb/acs.bin fip/
61 $ cp $FIPDIR/gxb/bl21.bin fip/
62 $ cp $FIPDIR/gxb/bl30.bin fip/
63 $ cp $FIPDIR/gxb/bl301.bin fip/
64 $ cp $FIPDIR/gxb/bl31.img fip/
95 $ $FIPDIR/gxb/aml_encrypt_gxb --bootsig \
/dports/sysutils/u-boot-qemu-arm64/u-boot-2021.07/doc/board/amlogic/
H A Dnanopi-k2.rst48 $ sed -i 's/arm-linux-/arm-none-eabi-/' arch/arm/cpu/armv8/gxb/firmware/scp_task/Makefile
59 $ cp $FIPDIR/gxb/bl2.bin fip/
60 $ cp $FIPDIR/gxb/acs.bin fip/
61 $ cp $FIPDIR/gxb/bl21.bin fip/
62 $ cp $FIPDIR/gxb/bl30.bin fip/
63 $ cp $FIPDIR/gxb/bl301.bin fip/
64 $ cp $FIPDIR/gxb/bl31.img fip/
95 $ $FIPDIR/gxb/aml_encrypt_gxb --bootsig \
/dports/sysutils/u-boot-rpi/u-boot-2021.07/doc/board/amlogic/
H A Dnanopi-k2.rst48 $ sed -i 's/arm-linux-/arm-none-eabi-/' arch/arm/cpu/armv8/gxb/firmware/scp_task/Makefile
59 $ cp $FIPDIR/gxb/bl2.bin fip/
60 $ cp $FIPDIR/gxb/acs.bin fip/
61 $ cp $FIPDIR/gxb/bl21.bin fip/
62 $ cp $FIPDIR/gxb/bl30.bin fip/
63 $ cp $FIPDIR/gxb/bl301.bin fip/
64 $ cp $FIPDIR/gxb/bl31.img fip/
95 $ $FIPDIR/gxb/aml_encrypt_gxb --bootsig \
/dports/emulators/qemu42/qemu-4.2.1/roms/u-boot/board/amlogic/odroid-c2/
H A DREADME.nanopi-k248 > sed -i 's/arm-linux-/arm-none-eabi-/' arch/arm/cpu/armv8/gxb/firmware/scp_task/Makefile
56 > cp $FIPDIR/gxb/bl2.bin fip/
57 > cp $FIPDIR/gxb/acs.bin fip/
58 > cp $FIPDIR/gxb/bl21.bin fip/
59 > cp $FIPDIR/gxb/bl30.bin fip/
60 > cp $FIPDIR/gxb/bl301.bin fip/
61 > cp $FIPDIR/gxb/bl31.img fip/
92 > $FIPDIR/gxb/aml_encrypt_gxb --bootsig \
/dports/sysutils/u-boot-nanopi-r4s/u-boot-2021.07/doc/board/amlogic/
H A Dnanopi-k2.rst48 $ sed -i 's/arm-linux-/arm-none-eabi-/' arch/arm/cpu/armv8/gxb/firmware/scp_task/Makefile
59 $ cp $FIPDIR/gxb/bl2.bin fip/
60 $ cp $FIPDIR/gxb/acs.bin fip/
61 $ cp $FIPDIR/gxb/bl21.bin fip/
62 $ cp $FIPDIR/gxb/bl30.bin fip/
63 $ cp $FIPDIR/gxb/bl301.bin fip/
64 $ cp $FIPDIR/gxb/bl31.img fip/
95 $ $FIPDIR/gxb/aml_encrypt_gxb --bootsig \
/dports/sysutils/u-boot-olimex-a20-som-evb/u-boot-2021.07/doc/board/amlogic/
H A Dnanopi-k2.rst48 $ sed -i 's/arm-linux-/arm-none-eabi-/' arch/arm/cpu/armv8/gxb/firmware/scp_task/Makefile
59 $ cp $FIPDIR/gxb/bl2.bin fip/
60 $ cp $FIPDIR/gxb/acs.bin fip/
61 $ cp $FIPDIR/gxb/bl21.bin fip/
62 $ cp $FIPDIR/gxb/bl30.bin fip/
63 $ cp $FIPDIR/gxb/bl301.bin fip/
64 $ cp $FIPDIR/gxb/bl31.img fip/
95 $ $FIPDIR/gxb/aml_encrypt_gxb --bootsig \
/dports/sysutils/u-boot-nanopi-m1plus/u-boot-2021.07/doc/board/amlogic/
H A Dnanopi-k2.rst48 $ sed -i 's/arm-linux-/arm-none-eabi-/' arch/arm/cpu/armv8/gxb/firmware/scp_task/Makefile
59 $ cp $FIPDIR/gxb/bl2.bin fip/
60 $ cp $FIPDIR/gxb/acs.bin fip/
61 $ cp $FIPDIR/gxb/bl21.bin fip/
62 $ cp $FIPDIR/gxb/bl30.bin fip/
63 $ cp $FIPDIR/gxb/bl301.bin fip/
64 $ cp $FIPDIR/gxb/bl31.img fip/
95 $ $FIPDIR/gxb/aml_encrypt_gxb --bootsig \
/dports/sysutils/u-boot-nanopi-neo-air/u-boot-2021.07/doc/board/amlogic/
H A Dnanopi-k2.rst48 $ sed -i 's/arm-linux-/arm-none-eabi-/' arch/arm/cpu/armv8/gxb/firmware/scp_task/Makefile
59 $ cp $FIPDIR/gxb/bl2.bin fip/
60 $ cp $FIPDIR/gxb/acs.bin fip/
61 $ cp $FIPDIR/gxb/bl21.bin fip/
62 $ cp $FIPDIR/gxb/bl30.bin fip/
63 $ cp $FIPDIR/gxb/bl301.bin fip/
64 $ cp $FIPDIR/gxb/bl31.img fip/
95 $ $FIPDIR/gxb/aml_encrypt_gxb --bootsig \
/dports/sysutils/u-boot-chip/u-boot-2021.07/doc/board/amlogic/
H A Dnanopi-k2.rst48 $ sed -i 's/arm-linux-/arm-none-eabi-/' arch/arm/cpu/armv8/gxb/firmware/scp_task/Makefile
59 $ cp $FIPDIR/gxb/bl2.bin fip/
60 $ cp $FIPDIR/gxb/acs.bin fip/
61 $ cp $FIPDIR/gxb/bl21.bin fip/
62 $ cp $FIPDIR/gxb/bl30.bin fip/
63 $ cp $FIPDIR/gxb/bl301.bin fip/
64 $ cp $FIPDIR/gxb/bl31.img fip/
95 $ $FIPDIR/gxb/aml_encrypt_gxb --bootsig \
/dports/sysutils/u-boot-beaglebone/u-boot-2021.07/doc/board/amlogic/
H A Dnanopi-k2.rst48 $ sed -i 's/arm-linux-/arm-none-eabi-/' arch/arm/cpu/armv8/gxb/firmware/scp_task/Makefile
59 $ cp $FIPDIR/gxb/bl2.bin fip/
60 $ cp $FIPDIR/gxb/acs.bin fip/
61 $ cp $FIPDIR/gxb/bl21.bin fip/
62 $ cp $FIPDIR/gxb/bl30.bin fip/
63 $ cp $FIPDIR/gxb/bl301.bin fip/
64 $ cp $FIPDIR/gxb/bl31.img fip/
95 $ $FIPDIR/gxb/aml_encrypt_gxb --bootsig \

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