Searched refs:haplotype2 (Results 1 – 3 of 3) sorted by relevance
351 …rstPositionWhereHaplotypesDiffer(final byte[] haplotype1, final byte[] haplotype2) throws IllegalA… in findFirstPositionWhereHaplotypesDiffer() argument353 …if ( haplotype2 == null || haplotype2.length == 0 ) throw new IllegalArgumentException("Haplotype2… in findFirstPositionWhereHaplotypesDiffer()355 for( int i = 0; i < haplotype1.length && i < haplotype2.length; i++ ) { in findFirstPositionWhereHaplotypesDiffer()356 if( haplotype1[i] != haplotype2[i] ) { in findFirstPositionWhereHaplotypesDiffer()361 return Math.min(haplotype1.length, haplotype2.length); in findFirstPositionWhereHaplotypesDiffer()
518 std::vector<char> haplotype2 = alleles[HAPLOTYPE2]; in runBafHaplohseqChr() local522 haplotypes.push_back(haplotype2); in runBafHaplohseqChr()621 std::vector<char> haplotype2 = alleles[HAPLOTYPE2]; in runVcfHaplohseqChr() local625 haplotypes.push_back(haplotype2); in runVcfHaplohseqChr()
597 String haplotype2 = "AAAACAC"+"G"+"ATGTGGGG"+"T"+"GGGTTAA"+"C"+"GTCTGAA"; in testOrphanedSubBranchDueToLackingOldJunctionTree() local614 … assembler.addSequence("anonymous", getBytes(haplotype2.substring(i, i + shortReadLength)), false); in testOrphanedSubBranchDueToLackingOldJunctionTree()628 Assert.assertTrue(haplotypes.contains(haplotype2)); in testOrphanedSubBranchDueToLackingOldJunctionTree()