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Searched refs:haplotypeB (Results 1 – 6 of 6) sorted by relevance

/dports/biology/vcflib/vcflib-1.0.2/src/
H A Dvcfld.cpp90 string haplotypeB; in calc() local
93haplotypeB += haplotypes[target[targetIndex]][1].substr(snpA, 1) += haplotypes[target[targetIndex… in calc()
96 targetHaplotypes[haplotypeB]++; in calc()
H A DsequenceDiversity.cpp134 string haplotypeB; in calc() local
137 haplotypeB += haplotypes[target[targetIndex]][1].substr(snpA, window) ; in calc()
140 targetHaplotypes[haplotypeB]++; in calc()
/dports/biology/freebayes/freebayes-1.3.5/vcflib/src/
H A Dvcfld.cpp79 string haplotypeB; in calc() local
82haplotypeB += haplotypes[target[targetIndex]][1].substr(snpA, 1) += haplotypes[target[targetIndex… in calc()
85 targetHaplotypes[haplotypeB]++; in calc()
H A DsequenceDiversity.cpp124 string haplotypeB; in calc() local
127 haplotypeB += haplotypes[target[targetIndex]][1].substr(snpA, window) ; in calc()
130 targetHaplotypes[haplotypeB]++; in calc()
/dports/biology/freebayes/freebayes-1.3.5/vcflib-temp/src/
H A Dvcfld.cpp79 string haplotypeB; in calc() local
82haplotypeB += haplotypes[target[targetIndex]][1].substr(snpA, 1) += haplotypes[target[targetIndex… in calc()
85 targetHaplotypes[haplotypeB]++; in calc()
H A DsequenceDiversity.cpp124 string haplotypeB; in calc() local
127 haplotypeB += haplotypes[target[targetIndex]][1].substr(snpA, window) ; in calc()
130 targetHaplotypes[haplotypeB]++; in calc()