Searched refs:hisat2_call (Results 1 – 1 of 1) sorted by relevance
101 hisat2_call = [args.hisat2_cmd, variable106 hisat2_call += ["-1", args.short_pair1, "-2", args.short_pair2]108 hisat2_call += ["-U", args.short_unpaired]110 hisat2_call += [">", os.path.join(args.out_dir, "short.sam")] 112 subprocess.call(hisat2_call)