Searched refs:horizontalNextGridOrigin (Results 1 – 3 of 3) sorted by relevance
| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/seeds/ |
| H A D | banded_chain_alignment_impl.h | 770 if (horizontalNextGridOrigin != 0u || verticalNextGridOrigin != 0u) in _initializeBandedChain()
782 … 1 - lowerDiagonal(band), 1 + upperDiagonal(band) - horizontalNextGridOrigin, in _initializeBandedChain()
813 horizontalNextGridOrigin = _max(0, static_cast<TSignedPosition>(endPositionH(seed)) - in _initializeBandedChain()
830 1 - lowerDiagonal(band), length(infixH) - horizontalNextGridOrigin + 1, in _initializeBandedChain()
912 TPosH horizontalNextGridOrigin = beginPositionH(currentSeed) + 1 - bandExtension - gridBegin.i1; in _computeGapArea() local
987 1 - lowerDiagonal(band), length(infixH) - horizontalNextGridOrigin + 1, in _computeAnchorArea()
1057 length(infixV) + 1, length(infixH) - horizontalNextGridOrigin + 1, in _finishBandedChain()
1072 gridBegin.i1 += horizontalNextGridOrigin; in _finishBandedChain()
1104 horizontalNextGridOrigin = _max(0, in _finishBandedChain()
1120 1 - lowerDiagonal(band), length(infixH) - horizontalNextGridOrigin + 1, in _finishBandedChain()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/seeds/ |
| H A D | banded_chain_alignment_impl.h | 858 if (horizontalNextGridOrigin != 0u || verticalNextGridOrigin != 0u) in _initializeBandedChain()
869 … 1 - lowerDiagonal(band), 1 + upperDiagonal(band) - horizontalNextGridOrigin, in _initializeBandedChain()
902 horizontalNextGridOrigin = _max(0, static_cast<TSignedPosition>(endPositionH(seed)) - in _initializeBandedChain()
919 1 - lowerDiagonal(band), length(infixH) - horizontalNextGridOrigin + 1, in _initializeBandedChain()
1004 TPosH horizontalNextGridOrigin = beginPositionH(currentSeed) + 1 - bandExtension - gridBegin.i1; in _computeGapArea() local
1080 1 - lowerDiagonal(band), length(infixH) - horizontalNextGridOrigin + 1, in _computeAnchorArea()
1151 length(infixV) + 1, length(infixH) - horizontalNextGridOrigin + 1, in _finishBandedChain()
1166 gridBegin.i1 += horizontalNextGridOrigin; in _finishBandedChain()
1198 horizontalNextGridOrigin = _max(0, in _finishBandedChain()
1214 1 - lowerDiagonal(band), length(infixH) - horizontalNextGridOrigin + 1, in _finishBandedChain()
[all …]
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| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/seeds/ |
| H A D | banded_chain_alignment_impl.h | 858 if (horizontalNextGridOrigin != 0u || verticalNextGridOrigin != 0u) in _initializeBandedChain()
869 … 1 - lowerDiagonal(band), 1 + upperDiagonal(band) - horizontalNextGridOrigin, in _initializeBandedChain()
902 horizontalNextGridOrigin = _max(0, static_cast<TSignedPosition>(endPositionH(seed)) - in _initializeBandedChain()
919 1 - lowerDiagonal(band), length(infixH) - horizontalNextGridOrigin + 1, in _initializeBandedChain()
1004 TPosH horizontalNextGridOrigin = beginPositionH(currentSeed) + 1 - bandExtension - gridBegin.i1; in _computeGapArea() local
1080 1 - lowerDiagonal(band), length(infixH) - horizontalNextGridOrigin + 1, in _computeAnchorArea()
1151 length(infixV) + 1, length(infixH) - horizontalNextGridOrigin + 1, in _finishBandedChain()
1166 gridBegin.i1 += horizontalNextGridOrigin; in _finishBandedChain()
1198 horizontalNextGridOrigin = _max(0, in _finishBandedChain()
1214 1 - lowerDiagonal(band), length(infixH) - horizontalNextGridOrigin + 1, in _finishBandedChain()
[all …]
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