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Searched refs:hpair (Results 1 – 25 of 30) sorted by relevance

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/dports/biology/exonerate/exonerate-2.4.0/src/bsdp/
H A Dhpair.c235 hpair); in HPair_confirm_start_func()
254 hpair); in HPair_update_start_func()
269 hpair); in HPair_confirm_end_func()
288 hpair); in HPair_update_end_func()
339 return hpair; in HPair_create()
363 g_free(hpair); in HPair_destroy()
370 g_assert(hpair); in HPair_add_hspset()
615 hrtrd.hpair = hpair; in HPair_find_candidate_hsp_pairs()
672 g_assert(hpair); in HPair_finalise()
699 hpair->user_data, alignment->score, hpair->subopt);
[all …]
H A Dsar.c353 component = SAR_find_end_component(hpair, in SAR_Terminal_create()
396 hpair->user_data, hpair->subopt) in SAR_Terminal_find_score()
446 hpair->user_data); in SAR_reduce_mid_overlap()
700 hpair->user_data, hpair->subopt) in SAR_Join_find_score()
832 SAR_HSP_quality(hpair, src_portal->calc, in SAR_Span_create()
904 heuristic_data = hpair->user_data; in SAR_Span_find_score()
908 hpair->subopt); in SAR_Span_find_score()
914 hpair->subopt); in SAR_Span_find_score()
950 sar_alignment->hpair = hpair; in SAR_Alignment_create()
1039 sar_alignment->hpair->subopt); in SAR_Alignment_add_SAR_Span()
[all …]
H A Dsar.h66 SAR_Terminal *SAR_Terminal_create(HSP *hsp, HPair *hpair,
74 Optimal *optimal, HPair *hpair);
85 SAR_Join *SAR_Join_create(HSP *src_hsp, HSP *dst_hsp, HPair *hpair,
89 C4_Score SAR_Join_find_score(SAR_Join *sar_join, HPair *hpair);
101 SAR_Span *SAR_Span_create(HSP *src_hsp, HSP *dst_hsp, HPair *hpair,
106 C4_Score SAR_Span_find_score(SAR_Span *sar_span, HPair *hpair);
115 HPair *hpair; member
125 HPair *hpair, C4_Score score);
H A Dhpair.h47 void HPair_destroy(HPair *hpair);
50 void HPair_add_hspset(HPair *hpair, C4_Portal *portal,
54 void HPair_finalise(HPair *hpair, C4_Score threshold);
56 Alignment *HPair_next_path(HPair *hpair, C4_Score threshold);
H A DMakefile.am2 TESTS = heuristic.test bsdp.test hpair.test sar.test
15 noinst_HEADERS = heuristic.h bsdp.h hpair.h sar.h
54 hpair_test_SOURCES = hpair.test.c hpair.c heuristic.c bsdp.c sar.c
H A DMakefile.in82 TESTS = heuristic.test bsdp.test hpair.test sar.test
89 noinst_HEADERS = heuristic.h bsdp.h hpair.h sar.h
108 hpair_test_SOURCES = hpair.test.c hpair.c heuristic.c bsdp.c sar.c
152 hpair_test_OBJECTS = hpair.test.o hpair.o heuristic.o bsdp.o sar.o
257 hpair.test: $(hpair_test_OBJECTS) $(hpair_test_DEPENDENCIES)
258 @rm -f hpair.test
/dports/devel/csoap/libsoap-1.1.0/nanohttp/
H A Dnanohttp-request.c74 hpair_t *hpair = NULL, *qpair = NULL, *tmppair = NULL; in _hrequest_parse_header() local
214 req->header = hpair = tmppair; in _hrequest_parse_header()
218 hpair->next = tmppair; in _hrequest_parse_header()
219 hpair = tmppair; in _hrequest_parse_header()
H A Dnanohttp-common.h300 typedef struct hpair hpair_t;
301 struct hpair struct
/dports/math/cgal/CGAL-5.3/include/CGAL/
H A DHalfedgeDS_list.h279 Halfedge_pair* hpair = edge_allocator.allocate(1); in get_edge_node() local
280 std::allocator_traits<Edge_allocator>::construct(edge_allocator, hpair, h, g); in get_edge_node()
281 Halfedge* h2 = &(hpair->first); in get_edge_node()
282 Halfedge* g2 = &(hpair->second); in get_edge_node()
283 CGAL_assertion( h2 == (Halfedge*)hpair); in get_edge_node()
292 Halfedge_pair* hpair = (Halfedge_pair*)(&*h); in put_edge_node() local
294 hpair = (Halfedge_pair*)(&*g); in put_edge_node()
295 CGAL_assertion( &(hpair->first) == (Halfedge*)hpair); in put_edge_node()
296 destroy(edge_allocator, hpair); in put_edge_node()
297 edge_allocator.deallocate( hpair, 1); in put_edge_node()
/dports/biology/exonerate/exonerate-2.4.0/src/c4/
H A Dopair.h43 Alignment *OPair_next_path(OPair *hpair, C4_Score threshold);
/dports/biology/exonerate/exonerate-2.4.0/src/hub/
H A Dgam.c803 HPair *hpair){ in GAM_Result_BSDP_add_HSPset() argument
806 HPair_add_hspset(hpair, portal, hspset); in GAM_Result_BSDP_add_HSPset()
833 register HPair *hpair; in GAM_Result_BSDP_create() local
844 hpair = HPair_create(gam->heuristic, gam_result->subopt, in GAM_Result_BSDP_create()
852 GAM_Result_BSDP_add_HSPset(comparison->dna_hspset, gam, hpair); in GAM_Result_BSDP_create()
855 hpair); in GAM_Result_BSDP_create()
858 hpair); in GAM_Result_BSDP_create()
859 HPair_finalise(hpair, threshold); in GAM_Result_BSDP_create()
864 alignment = HPair_next_path(hpair, threshold); in GAM_Result_BSDP_create()
875 HPair_destroy(hpair); in GAM_Result_BSDP_create()
H A DMakefile.in90 …op_srcdir)/src/bsdp/heuristic.o $(top_srcdir)/src/bsdp/hpair.o …
129 $(top_srcdir)/src/bsdp/hpair.o $(top_srcdir)/src/sdp/boundary.o \
174 $(top_srcdir)/src/bsdp/hpair.o $(top_srcdir)/src/sdp/boundary.o \
/dports/devel/cutils/cutils-1.6/lib/
H A Dhtable.h39 } hpair; typedef
/dports/lang/gcc12-devel/gcc-12-20211205/libphobos/libdruntime/core/internal/
H A Dhash.d651 size_t[2] hpair;
652 hpair[0] = key.hashOf();
653 hpair[1] = val.hashOf();
654 h += hpair.hashOf();
/dports/lang/gcc11/gcc-11.2.0/libphobos/libdruntime/core/internal/
H A Dhash.d680 size_t[2] hpair;
681 hpair[0] = key.hashOf();
682 hpair[1] = val.hashOf();
683 h += hpair.hashOf();
/dports/lang/gcc10/gcc-10.3.0/libphobos/libdruntime/core/internal/
H A Dhash.d680 size_t[2] hpair;
681 hpair[0] = key.hashOf();
682 hpair[1] = val.hashOf();
683 h += hpair.hashOf();
/dports/lang/gcc11-devel/gcc-11-20211009/libphobos/libdruntime/core/internal/
H A Dhash.d680 size_t[2] hpair;
681 hpair[0] = key.hashOf();
682 hpair[1] = val.hashOf();
683 h += hpair.hashOf();
/dports/devel/avr-gcc/gcc-10.2.0/libphobos/libdruntime/core/internal/
H A Dhash.d680 size_t[2] hpair;
681 hpair[0] = key.hashOf();
682 hpair[1] = val.hashOf();
683 h += hpair.hashOf();
/dports/lang/gcc9-devel/gcc-9-20211007/libphobos/libdruntime/core/internal/
H A Dhash.d680 size_t[2] hpair;
681 hpair[0] = key.hashOf();
682 hpair[1] = val.hashOf();
683 h += hpair.hashOf();
/dports/lang/gcc9/gcc-9.4.0/libphobos/libdruntime/core/internal/
H A Dhash.d680 size_t[2] hpair;
681 hpair[0] = key.hashOf();
682 hpair[1] = val.hashOf();
683 h += hpair.hashOf();
/dports/lang/gcc10-devel/gcc-10-20211008/libphobos/libdruntime/core/internal/
H A Dhash.d680 size_t[2] hpair;
681 hpair[0] = key.hashOf();
682 hpair[1] = val.hashOf();
683 h += hpair.hashOf();
/dports/misc/cxx_atomics_pic/gcc-11.2.0/libphobos/libdruntime/core/internal/
H A Dhash.d680 size_t[2] hpair;
681 hpair[0] = key.hashOf();
682 hpair[1] = val.hashOf();
683 h += hpair.hashOf();
/dports/lang/gcc9-aux/gcc-9.1.0/libphobos/libdruntime/core/internal/
H A Dhash.d680 size_t[2] hpair;
681 hpair[0] = key.hashOf();
682 hpair[1] = val.hashOf();
683 h += hpair.hashOf();
/dports/math/cgal/CGAL-5.3/include/CGAL/Boolean_set_operations_2/
H A DGps_on_surface_base_2_impl.h601 std::pair<GP_Holes_const_iterator, GP_Holes_const_iterator> hpair = in _construct_curves() local
604 for (hit = hpair.first; hit != hpair.second; ++hit) in _construct_curves()
/dports/devel/cutils/cutils-1.6/src/cobfusc/
H A Dcobfusc.c236 hpair *hp; in free_tables()
952 hpair *hp; in main()

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