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Searched refs:huge_table (Results 1 – 3 of 3) sorted by relevance

/dports/biology/subread/subread-2.0.2-source/src/
H A Dindex-builder.c341 int is_no_info = HashTableGet(huge_table, NULL+1+int_key)-NULL; in build_gene_index()
472 …], char ** chro_files, int chro_file_number, int threshold, HashTable *huge_table, long long * act… in scan_gene_index() argument
663 …HashTablePut(huge_table,NULL+1+ current_bucket -> item_keys[j], NULL+current_bucket -> item_values… in scan_gene_index()
676 if(huge_table -> numOfElements) in scan_gene_index()
678 print_in_box(80,0,0,"%llu uninformative subreads were found.", huge_table -> numOfElements); in scan_gene_index()
1263 HashTable * huge_table; in main() local
1264 huge_table = HashTableCreate(200000); in main()
1268 …ret = ret || scan_gene_index(output_file, ptr_tmp_fa_file , 1, threshold, huge_table, &actual_base… in main()
1269 …ret = ret || build_gene_index(output_file, ptr_tmp_fa_file , 1, threshold, huge_table, chromosome_… in main()
1272 …long long needed_mem = estm_need_memory + huge_table->numOfElements * sizeof(KeyValuePair) + 560l… in main()
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H A Dgene-algorithms.h40 int remove_repeated_reads(gehash_t * table, gehash_t * huge_table,int index_threshold);
H A Dgene-algorithms.c345 int remove_repeated_reads(gehash_t * table, gehash_t * huge_table, int index_threshold) in remove_repeated_reads() argument
401 if (gehash_exist(huge_table, vals[j])) in remove_repeated_reads()
406 gehash_insert(huge_table, vals[j], 1, NULL); in remove_repeated_reads()