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Searched refs:iBin (Results 1 – 25 of 200) sorted by relevance

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/dports/biology/star/STAR-2.7.9a/source/
H A DBAMoutput.cpp81 uint32 iBin=0; in coordOneAlign() local
99 binStream[iBin]->write(binStart[iBin],binBytes[iBin]); in coordOneAlign()
109 memcpy(binStart[iBin]+binBytes[iBin], bamIn, bamSize); in coordOneAlign()
110 binBytes[iBin] += bamSize; in coordOneAlign()
111 memcpy(binStart[iBin]+binBytes[iBin], &iRead, sizeof(uint)); in coordOneAlign()
114 binTotalN[iBin] += 1; in coordOneAlign()
172 for (uint32 iBin=0; iBin<nBins; iBin++) { in coordFlush() local
173 binStream[iBin]->write(binStart[iBin],binBytes[iBin]); in coordFlush()
181 binStream[iBin]->write(binStart[iBin],binBytes[iBin]); in coordUnmappedPrepareBySJout()
182 binStream[iBin]->flush(); in coordUnmappedPrepareBySJout()
[all …]
H A DReadAlign_createExtendWindowsWithAlign.cpp13 uint iBin=-1, iWin=-1, iWinRight=-1; in createExtendWindowsWithAlign() local
21 …for (iBin=aBin-1; iBin >= ( aBin>P.winAnchorDistNbins ? aBin-P.winAnchorDistNbins : 0 ); --iBin)… in createExtendWindowsWithAlign()
22 if (wB[iBin]<uintWinBinMax) { in createExtendWindowsWithAlign()
26 if (iBin==0) break; in createExtendWindowsWithAlign()
30 iWin=wB[iBin]; in createExtendWindowsWithAlign()
40 …for (iBin=aBin+1; iBin<min(aBin+P.winAnchorDistNbins+1,P.winBinN); ++iBin) {//go right, find win… in createExtendWindowsWithAlign()
41 if (wB[iBin]<uintWinBinMax) { in createExtendWindowsWithAlign()
49 while (wB[iBin]==wB[iBin+1]) ++iBin; //extend through all bins of the right window in createExtendWindowsWithAlign()
50 iBinRight=iBin; in createExtendWindowsWithAlign()
51 iWinRight=wB[iBin]; in createExtendWindowsWithAlign()
[all …]
H A DBAMbinSortByCoordinate.cpp7 void BAMbinSortByCoordinate(uint32 iBin, uint binN, uint binS, uint nThreads, string dirBAMsort, Pa… in BAMbinSortByCoordinate() argument
17 string bamInFile=dirBAMsort+to_string(it)+"/"+to_string((uint) iBin); in BAMbinSortByCoordinate()
26 …RROR: failed reading from temporary file: " << dirBAMsort+to_string(it)+"/"+to_string((uint) iBin); in BAMbinSortByCoordinate()
36 … << "Expected bin size=" <<binS <<" ; size on disk="<< bamInBytes <<" ; bin number="<< iBin <<"\n"; in BAMbinSortByCoordinate()
55 …bgzfBin=bgzf_open((dirBAMsort+"/b"+to_string((uint) iBin)).c_str(),("w"+to_string((long long) P.ou… in BAMbinSortByCoordinate()
58 …atal ERROR: could not open temporary bam file: " << dirBAMsort+"/b"+to_string((uint) iBin) << "\n"; in BAMbinSortByCoordinate()
H A DBAMbinSortUnmapped.cpp5 void BAMbinSortUnmapped(uint32 iBin, uint nThreads, string dirBAMsort, Parameters &P, Genome &genom… in BAMbinSortUnmapped() argument
8 …bgzfBin=bgzf_open((dirBAMsort+"/b"+to_string((uint) iBin)).c_str(),("w"+to_string((long long) P.ou… in BAMbinSortUnmapped()
11 …atal ERROR: could not open temporary bam file: " << dirBAMsort+"/b"+to_string((uint) iBin) << "\n"; in BAMbinSortUnmapped()
23 bamInFile.push_back(dirBAMsort+to_string(it)+"/"+to_string((uint) iBin)); in BAMbinSortUnmapped()
24 bamInFile.push_back(dirBAMsort+to_string(it)+"/"+to_string((uint) iBin)+".BySJout"); in BAMbinSortUnmapped()
H A DBAMbinSortUnmapped.h10 void BAMbinSortUnmapped(uint32 iBin, uint nThreads, string dirBAMsort, Parameters &P, Genome &genom…
H A DBAMbinSortByCoordinate.h10 void BAMbinSortByCoordinate(uint32 iBin, uint binN, uint binS, uint nThreads, string dirBAMsort, Pa…
/dports/databases/sqlite3/sqlite-src-3350500/src/
H A Dmem5.c222 int iBin; /* Index into mem5.aiFreelist[] */ in memsys5MallocUnsafe() local
248 for(iBin=iLogsize; iBin<=LOGMAX && mem5.aiFreelist[iBin]<0; iBin++){} in memsys5MallocUnsafe()
249 if( iBin>LOGMAX ){ in memsys5MallocUnsafe()
254 i = mem5.aiFreelist[iBin]; in memsys5MallocUnsafe()
255 memsys5Unlink(i, iBin); in memsys5MallocUnsafe()
256 while( iBin>iLogsize ){ in memsys5MallocUnsafe()
259 iBin--; in memsys5MallocUnsafe()
260 newSize = 1 << iBin; in memsys5MallocUnsafe()
261 mem5.aCtrl[i+newSize] = CTRL_FREE | iBin; in memsys5MallocUnsafe()
262 memsys5Link(i+newSize, iBin); in memsys5MallocUnsafe()
/dports/databases/sqlcipher/sqlcipher-3.4.2/src/
H A Dmem5.c222 int iBin; /* Index into mem5.aiFreelist[] */ in memsys5MallocUnsafe() local
248 for(iBin=iLogsize; iBin<=LOGMAX && mem5.aiFreelist[iBin]<0; iBin++){} in memsys5MallocUnsafe()
249 if( iBin>LOGMAX ){ in memsys5MallocUnsafe()
254 i = mem5.aiFreelist[iBin]; in memsys5MallocUnsafe()
255 memsys5Unlink(i, iBin); in memsys5MallocUnsafe()
256 while( iBin>iLogsize ){ in memsys5MallocUnsafe()
259 iBin--; in memsys5MallocUnsafe()
260 newSize = 1 << iBin; in memsys5MallocUnsafe()
261 mem5.aCtrl[i+newSize] = CTRL_FREE | iBin; in memsys5MallocUnsafe()
262 memsys5Link(i+newSize, iBin); in memsys5MallocUnsafe()
/dports/www/qt5-webengine/qtwebengine-everywhere-src-5.15.2/src/3rdparty/chromium/third_party/sqlite/src/src/
H A Dmem5.c222 int iBin; /* Index into mem5.aiFreelist[] */ in memsys5MallocUnsafe() local
248 for(iBin=iLogsize; iBin<=LOGMAX && mem5.aiFreelist[iBin]<0; iBin++){} in memsys5MallocUnsafe()
249 if( iBin>LOGMAX ){ in memsys5MallocUnsafe()
254 i = mem5.aiFreelist[iBin]; in memsys5MallocUnsafe()
255 memsys5Unlink(i, iBin); in memsys5MallocUnsafe()
256 while( iBin>iLogsize ){ in memsys5MallocUnsafe()
259 iBin--; in memsys5MallocUnsafe()
260 newSize = 1 << iBin; in memsys5MallocUnsafe()
261 mem5.aCtrl[i+newSize] = CTRL_FREE | iBin; in memsys5MallocUnsafe()
262 memsys5Link(i+newSize, iBin); in memsys5MallocUnsafe()
/dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/sqlite/src/src/
H A Dmem5.c222 int iBin; /* Index into mem5.aiFreelist[] */ in memsys5MallocUnsafe() local
248 for(iBin=iLogsize; iBin<=LOGMAX && mem5.aiFreelist[iBin]<0; iBin++){} in memsys5MallocUnsafe()
249 if( iBin>LOGMAX ){ in memsys5MallocUnsafe()
254 i = mem5.aiFreelist[iBin]; in memsys5MallocUnsafe()
255 memsys5Unlink(i, iBin); in memsys5MallocUnsafe()
256 while( iBin>iLogsize ){ in memsys5MallocUnsafe()
259 iBin--; in memsys5MallocUnsafe()
260 newSize = 1 << iBin; in memsys5MallocUnsafe()
261 mem5.aCtrl[i+newSize] = CTRL_FREE | iBin; in memsys5MallocUnsafe()
262 memsys5Link(i+newSize, iBin); in memsys5MallocUnsafe()
/dports/databases/db5/db-5.3.28/lang/sql/sqlite/src/
H A Dmem5.c243 int iBin; /* Index into mem5.aiFreelist[] */ in memsys5MallocUnsafe() local
270 for(iBin=iLogsize; mem5.aiFreelist[iBin]<0 && iBin<=LOGMAX; iBin++){} in memsys5MallocUnsafe()
271 if( iBin>LOGMAX ){ in memsys5MallocUnsafe()
276 i = memsys5UnlinkFirst(iBin); in memsys5MallocUnsafe()
277 while( iBin>iLogsize ){ in memsys5MallocUnsafe()
280 iBin--; in memsys5MallocUnsafe()
281 newSize = 1 << iBin; in memsys5MallocUnsafe()
282 mem5.aCtrl[i+newSize] = CTRL_FREE | iBin; in memsys5MallocUnsafe()
283 memsys5Link(i+newSize, iBin); in memsys5MallocUnsafe()
/dports/math/scilab/scilab-6.1.1/scilab/modules/ast/src/cpp/types/
H A Dfile.cpp65 int iBin = 0; in getFileModeAsInt() local
87 iBin = 1; in getFileModeAsInt()
91 return 100 * iMode + 10 * iPlus + iBin; in getFileModeAsInt()
98 int iBin = _iMode - iMode * 100 - iPlus * 10; in setFileModeAsInt() local
119 if (iBin) in setFileModeAsInt()
/dports/science/liggghts/LIGGGHTS-PUBLIC-3.8.0-26-g6e873439/src/
H A Dfix_neighlist_mesh.cpp305 …, int& nchecked, double contactDistanceFactor, int *mask, int nlocal, int iBin, int iTri, bool hav… in checkBin() argument
307 int iAtom = binhead[iBin]; in checkBin()
391 const int iBin = iz*mbiny*mbinx + iy*mbinx + ix; in handleTriangle() local
392 if(iBin < 0 || iBin >= maxhead) continue; in handleTriangle()
393 …checkBin(bonus, neighbors, nchecked, contactDistanceFactor, mask, nlocal, iBin, iTri, haveNonSpher… in handleTriangle()
401 const int iBin = triangleBins[i]; in handleTriangle() local
402 …checkBin(bonus, neighbors, nchecked, contactDistanceFactor, mask, nlocal, iBin, iTri, haveNonSpher… in handleTriangle()
483 int iBin = iz * mbiny * mbinx + iy * mbinx + ix; in generate_bin_list() local
484 if (iBin < 0 || iBin >= maxhead) in generate_bin_list()
492 binlist.push_back(iBin); in generate_bin_list()
/dports/cad/abc/abc-a4518e6f833885c905964f1233d11e5b941ec24c/src/proof/ssw/
H A DsswRarity2.c53 static inline int Ssw_RarGetBinPat( Ssw_RarMan_t * p, int iBin, int iPat ) in Ssw_RarGetBinPat() argument
55 assert( iBin >= 0 && iBin < Aig_ManRegNum(p->pAig) / p->nBinSize ); in Ssw_RarGetBinPat()
57 return p->pRarity[iBin * (1 << p->nBinSize) + iPat]; in Ssw_RarGetBinPat()
59 static inline void Ssw_RarSetBinPat( Ssw_RarMan_t * p, int iBin, int iPat, int Value ) in Ssw_RarSetBinPat() argument
61 assert( iBin >= 0 && iBin < Aig_ManRegNum(p->pAig) / p->nBinSize ); in Ssw_RarSetBinPat()
63 p->pRarity[iBin * (1 << p->nBinSize) + iPat] = Value; in Ssw_RarSetBinPat()
65 static inline void Ssw_RarAddToBinPat( Ssw_RarMan_t * p, int iBin, int iPat ) in Ssw_RarAddToBinPat() argument
67 assert( iBin >= 0 && iBin < Aig_ManRegNum(p->pAig) / p->nBinSize ); in Ssw_RarAddToBinPat()
69 p->pRarity[iBin * (1 << p->nBinSize) + iPat]++; in Ssw_RarAddToBinPat()
H A DsswRarity.c62 static inline int Ssw_RarGetBinPat( Ssw_RarMan_t * p, int iBin, int iPat ) in Ssw_RarGetBinPat() argument
64 assert( iBin >= 0 && iBin < Aig_ManRegNum(p->pAig) / p->pPars->nBinSize ); in Ssw_RarGetBinPat()
66 return p->pRarity[iBin * (1 << p->pPars->nBinSize) + iPat]; in Ssw_RarGetBinPat()
68 static inline void Ssw_RarSetBinPat( Ssw_RarMan_t * p, int iBin, int iPat, int Value ) in Ssw_RarSetBinPat() argument
70 assert( iBin >= 0 && iBin < Aig_ManRegNum(p->pAig) / p->pPars->nBinSize ); in Ssw_RarSetBinPat()
72 p->pRarity[iBin * (1 << p->pPars->nBinSize) + iPat] = Value; in Ssw_RarSetBinPat()
74 static inline void Ssw_RarAddToBinPat( Ssw_RarMan_t * p, int iBin, int iPat ) in Ssw_RarAddToBinPat() argument
76 assert( iBin >= 0 && iBin < Aig_ManRegNum(p->pAig) / p->pPars->nBinSize ); in Ssw_RarAddToBinPat()
78 p->pRarity[iBin * (1 << p->pPars->nBinSize) + iPat]++; in Ssw_RarAddToBinPat()
/dports/audio/ardour6/Ardour-6.8.0/libs/vamp-pyin/
H A DYin.cpp101 for (size_t iBin = 0; iBin < m_yinBufferSize; ++iBin) in processProbabilisticYin() local
103 probSum += peakProbability[iBin]; in processProbabilisticYin()
H A DYinVamp.cpp346 for (size_t iBin = 0; iBin < yo.salience.size(); ++iBin) in process() local
348 f.values.push_back(yo.salience[iBin]); in process()
H A DPYinVamp.cpp503 for (size_t iBin = 0; iBin < yo.salience.size(); ++iBin) in process() local
505 f.values.push_back(yo.salience[iBin]); in process()
506 salienceSum += yo.salience[iBin]; in process()
/dports/graphics/py-gdal/gdal-3.3.3/apps/
H A Dgdalenhance.cpp639 int iBin = static_cast<int>( in EnhancerCallback() local
641 iBin = std::max(0, std::min(psEInfo->nLUTBins - 1, iBin)); in EnhancerCallback()
644 pabyOutImage[iPixel] = static_cast<GByte>(psEInfo->panLUT[iBin]); in EnhancerCallback()
646 pabyOutImage[iPixel] = static_cast<GByte>(iBin); in EnhancerCallback()
/dports/graphics/p5-Geo-GDAL/gdal-3.3.3/apps/
H A Dgdalenhance.cpp639 int iBin = static_cast<int>( in EnhancerCallback() local
641 iBin = std::max(0, std::min(psEInfo->nLUTBins - 1, iBin)); in EnhancerCallback()
644 pabyOutImage[iPixel] = static_cast<GByte>(psEInfo->panLUT[iBin]); in EnhancerCallback()
646 pabyOutImage[iPixel] = static_cast<GByte>(iBin); in EnhancerCallback()
/dports/graphics/gdal/gdal-3.3.3/apps/
H A Dgdalenhance.cpp639 int iBin = static_cast<int>( in EnhancerCallback() local
641 iBin = std::max(0, std::min(psEInfo->nLUTBins - 1, iBin)); in EnhancerCallback()
644 pabyOutImage[iPixel] = static_cast<GByte>(psEInfo->panLUT[iBin]); in EnhancerCallback()
646 pabyOutImage[iPixel] = static_cast<GByte>(iBin); in EnhancerCallback()
/dports/math/apache-commons-math/commons-math3-3.6.1-src/src/main/java/org/apache/commons/math3/distribution/fitting/
H A DMultivariateNormalMixtureExpectationMaximization.java351 for (int i = minIndex, iBin = 0; i < maxIndex; i++, iBin++) { in estimate()
355 binData[iBin][j] = val; in estimate()
/dports/devel/upp/upp/bazaar/plugin/geotiff/libgeotiff/gcore/
H A Dgdal_rat.cpp908 int iBin = (int) floor((dfValue - dfRow0Min) / dfBinSize); in GetRowOfValue() local
909 if( iBin < 0 || iBin >= nRowCount ) in GetRowOfValue()
912 return iBin; in GetRowOfValue()
/dports/comms/fldigi/fldigi-4.1.20/src/rsid/
H A Drsid.cxx589 void cRsId::apply(int iBin, int iSymbol, int extended) in apply() argument
609 rsidfreq = (iBin + RSID_NSYMBOLS - 0.5) * RSID_SAMPLE_RATE / 2048.0; in apply()
694 int iBin = -1; in search_amp() local
716 iBin = j; in search_amp()
724 bin_out = iBin; in search_amp()
/dports/comms/fldigi/fldigi-4.1.20/src/include/
H A Drsid.h146 void apply ( int iBin, int iSymbol, int extended );

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