/dports/biology/star/STAR-2.7.9a/source/ |
H A D | BAMoutput.cpp | 81 uint32 iBin=0; in coordOneAlign() local 99 binStream[iBin]->write(binStart[iBin],binBytes[iBin]); in coordOneAlign() 109 memcpy(binStart[iBin]+binBytes[iBin], bamIn, bamSize); in coordOneAlign() 110 binBytes[iBin] += bamSize; in coordOneAlign() 111 memcpy(binStart[iBin]+binBytes[iBin], &iRead, sizeof(uint)); in coordOneAlign() 114 binTotalN[iBin] += 1; in coordOneAlign() 172 for (uint32 iBin=0; iBin<nBins; iBin++) { in coordFlush() local 173 binStream[iBin]->write(binStart[iBin],binBytes[iBin]); in coordFlush() 181 binStream[iBin]->write(binStart[iBin],binBytes[iBin]); in coordUnmappedPrepareBySJout() 182 binStream[iBin]->flush(); in coordUnmappedPrepareBySJout() [all …]
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H A D | ReadAlign_createExtendWindowsWithAlign.cpp | 13 uint iBin=-1, iWin=-1, iWinRight=-1; in createExtendWindowsWithAlign() local 21 …for (iBin=aBin-1; iBin >= ( aBin>P.winAnchorDistNbins ? aBin-P.winAnchorDistNbins : 0 ); --iBin)… in createExtendWindowsWithAlign() 22 if (wB[iBin]<uintWinBinMax) { in createExtendWindowsWithAlign() 26 if (iBin==0) break; in createExtendWindowsWithAlign() 30 iWin=wB[iBin]; in createExtendWindowsWithAlign() 40 …for (iBin=aBin+1; iBin<min(aBin+P.winAnchorDistNbins+1,P.winBinN); ++iBin) {//go right, find win… in createExtendWindowsWithAlign() 41 if (wB[iBin]<uintWinBinMax) { in createExtendWindowsWithAlign() 49 while (wB[iBin]==wB[iBin+1]) ++iBin; //extend through all bins of the right window in createExtendWindowsWithAlign() 50 iBinRight=iBin; in createExtendWindowsWithAlign() 51 iWinRight=wB[iBin]; in createExtendWindowsWithAlign() [all …]
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H A D | BAMbinSortByCoordinate.cpp | 7 void BAMbinSortByCoordinate(uint32 iBin, uint binN, uint binS, uint nThreads, string dirBAMsort, Pa… in BAMbinSortByCoordinate() argument 17 string bamInFile=dirBAMsort+to_string(it)+"/"+to_string((uint) iBin); in BAMbinSortByCoordinate() 26 …RROR: failed reading from temporary file: " << dirBAMsort+to_string(it)+"/"+to_string((uint) iBin); in BAMbinSortByCoordinate() 36 … << "Expected bin size=" <<binS <<" ; size on disk="<< bamInBytes <<" ; bin number="<< iBin <<"\n"; in BAMbinSortByCoordinate() 55 …bgzfBin=bgzf_open((dirBAMsort+"/b"+to_string((uint) iBin)).c_str(),("w"+to_string((long long) P.ou… in BAMbinSortByCoordinate() 58 …atal ERROR: could not open temporary bam file: " << dirBAMsort+"/b"+to_string((uint) iBin) << "\n"; in BAMbinSortByCoordinate()
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H A D | BAMbinSortUnmapped.cpp | 5 void BAMbinSortUnmapped(uint32 iBin, uint nThreads, string dirBAMsort, Parameters &P, Genome &genom… in BAMbinSortUnmapped() argument 8 …bgzfBin=bgzf_open((dirBAMsort+"/b"+to_string((uint) iBin)).c_str(),("w"+to_string((long long) P.ou… in BAMbinSortUnmapped() 11 …atal ERROR: could not open temporary bam file: " << dirBAMsort+"/b"+to_string((uint) iBin) << "\n"; in BAMbinSortUnmapped() 23 bamInFile.push_back(dirBAMsort+to_string(it)+"/"+to_string((uint) iBin)); in BAMbinSortUnmapped() 24 bamInFile.push_back(dirBAMsort+to_string(it)+"/"+to_string((uint) iBin)+".BySJout"); in BAMbinSortUnmapped()
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H A D | BAMbinSortUnmapped.h | 10 void BAMbinSortUnmapped(uint32 iBin, uint nThreads, string dirBAMsort, Parameters &P, Genome &genom…
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H A D | BAMbinSortByCoordinate.h | 10 void BAMbinSortByCoordinate(uint32 iBin, uint binN, uint binS, uint nThreads, string dirBAMsort, Pa…
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/dports/databases/sqlite3/sqlite-src-3350500/src/ |
H A D | mem5.c | 222 int iBin; /* Index into mem5.aiFreelist[] */ in memsys5MallocUnsafe() local 248 for(iBin=iLogsize; iBin<=LOGMAX && mem5.aiFreelist[iBin]<0; iBin++){} in memsys5MallocUnsafe() 249 if( iBin>LOGMAX ){ in memsys5MallocUnsafe() 254 i = mem5.aiFreelist[iBin]; in memsys5MallocUnsafe() 255 memsys5Unlink(i, iBin); in memsys5MallocUnsafe() 256 while( iBin>iLogsize ){ in memsys5MallocUnsafe() 259 iBin--; in memsys5MallocUnsafe() 260 newSize = 1 << iBin; in memsys5MallocUnsafe() 261 mem5.aCtrl[i+newSize] = CTRL_FREE | iBin; in memsys5MallocUnsafe() 262 memsys5Link(i+newSize, iBin); in memsys5MallocUnsafe()
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/dports/databases/sqlcipher/sqlcipher-3.4.2/src/ |
H A D | mem5.c | 222 int iBin; /* Index into mem5.aiFreelist[] */ in memsys5MallocUnsafe() local 248 for(iBin=iLogsize; iBin<=LOGMAX && mem5.aiFreelist[iBin]<0; iBin++){} in memsys5MallocUnsafe() 249 if( iBin>LOGMAX ){ in memsys5MallocUnsafe() 254 i = mem5.aiFreelist[iBin]; in memsys5MallocUnsafe() 255 memsys5Unlink(i, iBin); in memsys5MallocUnsafe() 256 while( iBin>iLogsize ){ in memsys5MallocUnsafe() 259 iBin--; in memsys5MallocUnsafe() 260 newSize = 1 << iBin; in memsys5MallocUnsafe() 261 mem5.aCtrl[i+newSize] = CTRL_FREE | iBin; in memsys5MallocUnsafe() 262 memsys5Link(i+newSize, iBin); in memsys5MallocUnsafe()
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/dports/www/qt5-webengine/qtwebengine-everywhere-src-5.15.2/src/3rdparty/chromium/third_party/sqlite/src/src/ |
H A D | mem5.c | 222 int iBin; /* Index into mem5.aiFreelist[] */ in memsys5MallocUnsafe() local 248 for(iBin=iLogsize; iBin<=LOGMAX && mem5.aiFreelist[iBin]<0; iBin++){} in memsys5MallocUnsafe() 249 if( iBin>LOGMAX ){ in memsys5MallocUnsafe() 254 i = mem5.aiFreelist[iBin]; in memsys5MallocUnsafe() 255 memsys5Unlink(i, iBin); in memsys5MallocUnsafe() 256 while( iBin>iLogsize ){ in memsys5MallocUnsafe() 259 iBin--; in memsys5MallocUnsafe() 260 newSize = 1 << iBin; in memsys5MallocUnsafe() 261 mem5.aCtrl[i+newSize] = CTRL_FREE | iBin; in memsys5MallocUnsafe() 262 memsys5Link(i+newSize, iBin); in memsys5MallocUnsafe()
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/dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/sqlite/src/src/ |
H A D | mem5.c | 222 int iBin; /* Index into mem5.aiFreelist[] */ in memsys5MallocUnsafe() local 248 for(iBin=iLogsize; iBin<=LOGMAX && mem5.aiFreelist[iBin]<0; iBin++){} in memsys5MallocUnsafe() 249 if( iBin>LOGMAX ){ in memsys5MallocUnsafe() 254 i = mem5.aiFreelist[iBin]; in memsys5MallocUnsafe() 255 memsys5Unlink(i, iBin); in memsys5MallocUnsafe() 256 while( iBin>iLogsize ){ in memsys5MallocUnsafe() 259 iBin--; in memsys5MallocUnsafe() 260 newSize = 1 << iBin; in memsys5MallocUnsafe() 261 mem5.aCtrl[i+newSize] = CTRL_FREE | iBin; in memsys5MallocUnsafe() 262 memsys5Link(i+newSize, iBin); in memsys5MallocUnsafe()
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/dports/databases/db5/db-5.3.28/lang/sql/sqlite/src/ |
H A D | mem5.c | 243 int iBin; /* Index into mem5.aiFreelist[] */ in memsys5MallocUnsafe() local 270 for(iBin=iLogsize; mem5.aiFreelist[iBin]<0 && iBin<=LOGMAX; iBin++){} in memsys5MallocUnsafe() 271 if( iBin>LOGMAX ){ in memsys5MallocUnsafe() 276 i = memsys5UnlinkFirst(iBin); in memsys5MallocUnsafe() 277 while( iBin>iLogsize ){ in memsys5MallocUnsafe() 280 iBin--; in memsys5MallocUnsafe() 281 newSize = 1 << iBin; in memsys5MallocUnsafe() 282 mem5.aCtrl[i+newSize] = CTRL_FREE | iBin; in memsys5MallocUnsafe() 283 memsys5Link(i+newSize, iBin); in memsys5MallocUnsafe()
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/dports/math/scilab/scilab-6.1.1/scilab/modules/ast/src/cpp/types/ |
H A D | file.cpp | 65 int iBin = 0; in getFileModeAsInt() local 87 iBin = 1; in getFileModeAsInt() 91 return 100 * iMode + 10 * iPlus + iBin; in getFileModeAsInt() 98 int iBin = _iMode - iMode * 100 - iPlus * 10; in setFileModeAsInt() local 119 if (iBin) in setFileModeAsInt()
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/dports/science/liggghts/LIGGGHTS-PUBLIC-3.8.0-26-g6e873439/src/ |
H A D | fix_neighlist_mesh.cpp | 305 …, int& nchecked, double contactDistanceFactor, int *mask, int nlocal, int iBin, int iTri, bool hav… in checkBin() argument 307 int iAtom = binhead[iBin]; in checkBin() 391 const int iBin = iz*mbiny*mbinx + iy*mbinx + ix; in handleTriangle() local 392 if(iBin < 0 || iBin >= maxhead) continue; in handleTriangle() 393 …checkBin(bonus, neighbors, nchecked, contactDistanceFactor, mask, nlocal, iBin, iTri, haveNonSpher… in handleTriangle() 401 const int iBin = triangleBins[i]; in handleTriangle() local 402 …checkBin(bonus, neighbors, nchecked, contactDistanceFactor, mask, nlocal, iBin, iTri, haveNonSpher… in handleTriangle() 483 int iBin = iz * mbiny * mbinx + iy * mbinx + ix; in generate_bin_list() local 484 if (iBin < 0 || iBin >= maxhead) in generate_bin_list() 492 binlist.push_back(iBin); in generate_bin_list()
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/dports/cad/abc/abc-a4518e6f833885c905964f1233d11e5b941ec24c/src/proof/ssw/ |
H A D | sswRarity2.c | 53 static inline int Ssw_RarGetBinPat( Ssw_RarMan_t * p, int iBin, int iPat ) in Ssw_RarGetBinPat() argument 55 assert( iBin >= 0 && iBin < Aig_ManRegNum(p->pAig) / p->nBinSize ); in Ssw_RarGetBinPat() 57 return p->pRarity[iBin * (1 << p->nBinSize) + iPat]; in Ssw_RarGetBinPat() 59 static inline void Ssw_RarSetBinPat( Ssw_RarMan_t * p, int iBin, int iPat, int Value ) in Ssw_RarSetBinPat() argument 61 assert( iBin >= 0 && iBin < Aig_ManRegNum(p->pAig) / p->nBinSize ); in Ssw_RarSetBinPat() 63 p->pRarity[iBin * (1 << p->nBinSize) + iPat] = Value; in Ssw_RarSetBinPat() 65 static inline void Ssw_RarAddToBinPat( Ssw_RarMan_t * p, int iBin, int iPat ) in Ssw_RarAddToBinPat() argument 67 assert( iBin >= 0 && iBin < Aig_ManRegNum(p->pAig) / p->nBinSize ); in Ssw_RarAddToBinPat() 69 p->pRarity[iBin * (1 << p->nBinSize) + iPat]++; in Ssw_RarAddToBinPat()
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H A D | sswRarity.c | 62 static inline int Ssw_RarGetBinPat( Ssw_RarMan_t * p, int iBin, int iPat ) in Ssw_RarGetBinPat() argument 64 assert( iBin >= 0 && iBin < Aig_ManRegNum(p->pAig) / p->pPars->nBinSize ); in Ssw_RarGetBinPat() 66 return p->pRarity[iBin * (1 << p->pPars->nBinSize) + iPat]; in Ssw_RarGetBinPat() 68 static inline void Ssw_RarSetBinPat( Ssw_RarMan_t * p, int iBin, int iPat, int Value ) in Ssw_RarSetBinPat() argument 70 assert( iBin >= 0 && iBin < Aig_ManRegNum(p->pAig) / p->pPars->nBinSize ); in Ssw_RarSetBinPat() 72 p->pRarity[iBin * (1 << p->pPars->nBinSize) + iPat] = Value; in Ssw_RarSetBinPat() 74 static inline void Ssw_RarAddToBinPat( Ssw_RarMan_t * p, int iBin, int iPat ) in Ssw_RarAddToBinPat() argument 76 assert( iBin >= 0 && iBin < Aig_ManRegNum(p->pAig) / p->pPars->nBinSize ); in Ssw_RarAddToBinPat() 78 p->pRarity[iBin * (1 << p->pPars->nBinSize) + iPat]++; in Ssw_RarAddToBinPat()
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/dports/audio/ardour6/Ardour-6.8.0/libs/vamp-pyin/ |
H A D | Yin.cpp | 101 for (size_t iBin = 0; iBin < m_yinBufferSize; ++iBin) in processProbabilisticYin() local 103 probSum += peakProbability[iBin]; in processProbabilisticYin()
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H A D | YinVamp.cpp | 346 for (size_t iBin = 0; iBin < yo.salience.size(); ++iBin) in process() local 348 f.values.push_back(yo.salience[iBin]); in process()
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H A D | PYinVamp.cpp | 503 for (size_t iBin = 0; iBin < yo.salience.size(); ++iBin) in process() local 505 f.values.push_back(yo.salience[iBin]); in process() 506 salienceSum += yo.salience[iBin]; in process()
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/dports/graphics/py-gdal/gdal-3.3.3/apps/ |
H A D | gdalenhance.cpp | 639 int iBin = static_cast<int>( in EnhancerCallback() local 641 iBin = std::max(0, std::min(psEInfo->nLUTBins - 1, iBin)); in EnhancerCallback() 644 pabyOutImage[iPixel] = static_cast<GByte>(psEInfo->panLUT[iBin]); in EnhancerCallback() 646 pabyOutImage[iPixel] = static_cast<GByte>(iBin); in EnhancerCallback()
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/dports/graphics/p5-Geo-GDAL/gdal-3.3.3/apps/ |
H A D | gdalenhance.cpp | 639 int iBin = static_cast<int>( in EnhancerCallback() local 641 iBin = std::max(0, std::min(psEInfo->nLUTBins - 1, iBin)); in EnhancerCallback() 644 pabyOutImage[iPixel] = static_cast<GByte>(psEInfo->panLUT[iBin]); in EnhancerCallback() 646 pabyOutImage[iPixel] = static_cast<GByte>(iBin); in EnhancerCallback()
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/dports/graphics/gdal/gdal-3.3.3/apps/ |
H A D | gdalenhance.cpp | 639 int iBin = static_cast<int>( in EnhancerCallback() local 641 iBin = std::max(0, std::min(psEInfo->nLUTBins - 1, iBin)); in EnhancerCallback() 644 pabyOutImage[iPixel] = static_cast<GByte>(psEInfo->panLUT[iBin]); in EnhancerCallback() 646 pabyOutImage[iPixel] = static_cast<GByte>(iBin); in EnhancerCallback()
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/dports/math/apache-commons-math/commons-math3-3.6.1-src/src/main/java/org/apache/commons/math3/distribution/fitting/ |
H A D | MultivariateNormalMixtureExpectationMaximization.java | 351 for (int i = minIndex, iBin = 0; i < maxIndex; i++, iBin++) { in estimate() 355 binData[iBin][j] = val; in estimate()
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/dports/devel/upp/upp/bazaar/plugin/geotiff/libgeotiff/gcore/ |
H A D | gdal_rat.cpp | 908 int iBin = (int) floor((dfValue - dfRow0Min) / dfBinSize); in GetRowOfValue() local 909 if( iBin < 0 || iBin >= nRowCount ) in GetRowOfValue() 912 return iBin; in GetRowOfValue()
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/dports/comms/fldigi/fldigi-4.1.20/src/rsid/ |
H A D | rsid.cxx | 589 void cRsId::apply(int iBin, int iSymbol, int extended) in apply() argument 609 rsidfreq = (iBin + RSID_NSYMBOLS - 0.5) * RSID_SAMPLE_RATE / 2048.0; in apply() 694 int iBin = -1; in search_amp() local 716 iBin = j; in search_amp() 724 bin_out = iBin; in search_amp()
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/dports/comms/fldigi/fldigi-4.1.20/src/include/ |
H A D | rsid.h | 146 void apply ( int iBin, int iSymbol, int extended );
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