Searched refs:iMLnni (Results 1 – 1 of 1) sorted by relevance
| /dports/biology/fasttree/FastTree-2.1.10_5/ |
| H A D | FastTree-2.1.10.c | 2347 int iMLnni; in main() local
2350 for (iMLnni = 0; iMLnni < MLnniToDo; iMLnni++) { in main()
2351 …int changes = NNI(/*IN/OUT*/NJ, iMLnni, MLnniToDo, /*use ml*/true, /*IN/OUT*/nni_stats, /*OUT*/&ma… in main()
2352 LogTree("ML_NNI%d",iMLnni+1, fpLog, NJ, aln->names, unique, bQuote); in main()
2354 …bool bConvergedHere = (iMLnni > 0) && ((loglk < lastloglk + treeLogLkDelta) || maxDelta < treeLogL… in main()
2357 iMLnni+1, in main()
2362 fprintf(fpLog, "TreeLogLk\tML_NNI%d\t%.4lf\tMaxChange\t%.4lf\n", iMLnni+1, loglk, maxDelta); in main()
2367 if (bConverged || iMLnni == MLnniToDo-2) { in main()
2379 if (iMLnni == 0 && NJ->rates.nRateCategories == 1) { in main()
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