Searched refs:ichain_match (Results 1 – 3 of 3) sorted by relevance
3300 if (intron_ovl) ichain_match=false; in getOvlCode()3310 if (intron_ovl) ichain_match=false; in getOvlCode()3324 ichain_match=true; in getOvlCode()3328 if (ichain_match) { in getOvlCode()3337 ichain_match=false; in getOvlCode()3387 else { intron_retention=true; ichain_match=false; } in getOvlCode()3397 else { intron_retention=true; ichain_match=false; } in getOvlCode()3400 if (ichain_match && l_iovh<4 && r_iovh<4) return 'c'; in getOvlCode()3412 else { ichain_match = false; } in getOvlCode()3420 else { ichain_match = false; } in getOvlCode()[all …]
3354 if (intron_ovl) ichain_match=false; in getOvlData()3364 if (intron_ovl) ichain_match=false; in getOvlData()3390 ichain_match=true; in getOvlData()3394 if (ichain_match) { in getOvlData()3403 ichain_match=false; in getOvlData()3436 else { intron_retention=true; ichain_match=false; } in getOvlData()3446 else { intron_retention=true; ichain_match=false; } in getOvlData()3449 if (ichain_match && l_iovh<4 && r_iovh<4) { in getOvlData()3464 else { ichain_match = false; } in getOvlData()3472 else { ichain_match = false; } in getOvlData()[all …]
3278 bool ichain_match=true; //if there is intron (sub-)chain match, to be updated by any mismatch in getOvlCode() local3296 if (intron_ovl) ichain_match=false; in getOvlCode()3306 if (intron_ovl) ichain_match=false; in getOvlCode()3317 if (ichain_match) { //chain matching still possible in getOvlCode()3328 ichain_match=false; in getOvlCode()3331 if (ichain_match) { //intron sub-chain match in getOvlCode()