Searched refs:idx_tscript (Results 1 – 4 of 4) sorted by relevance
| /dports/biology/bio-mocha/bcftools-1.14/ |
| H A D | csq.c | 566 regidx_t *idx_cds, *idx_utr, *idx_exon, *idx_tscript; member
1143 regidx_push(args->idx_tscript, chr_beg, chr_end, tr->beg, tr->end, &tr); in tscript_init_cds()
1296 args->idx_tscript = regidx_init(NULL, NULL, regidx_free_tscript, sizeof(tscript_t*), NULL); in init_gff()
1354 regidx_nregs(args->idx_tscript), in init_gff()
1475 regidx_destroy(args->idx_tscript); in destroy_data()
3921 if ( !regidx_overlap(args->idx_tscript,chr,rec->pos,rec->pos+rec->rlen, args->itr) ) return 0; in test_tscript()
4026 if ( !hit && regidx_overlap(args->idx_tscript,chr,beg,end, args->itr) ) in test_symbolic_alt()
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| /dports/biology/bcftools/bcftools-1.14/ |
| H A D | csq.c | 566 regidx_t *idx_cds, *idx_utr, *idx_exon, *idx_tscript; member
1143 regidx_push(args->idx_tscript, chr_beg, chr_end, tr->beg, tr->end, &tr); in tscript_init_cds()
1296 args->idx_tscript = regidx_init(NULL, NULL, regidx_free_tscript, sizeof(tscript_t*), NULL); in init_gff()
1354 regidx_nregs(args->idx_tscript), in init_gff()
1475 regidx_destroy(args->idx_tscript); in destroy_data()
3921 if ( !regidx_overlap(args->idx_tscript,chr,rec->pos,rec->pos+rec->rlen, args->itr) ) return 0; in test_tscript()
4026 if ( !hit && regidx_overlap(args->idx_tscript,chr,beg,end, args->itr) ) in test_symbolic_alt()
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| /dports/biology/py-pysam/pysam-0.18.0/bcftools/ |
| H A D | csq.c | 566 regidx_t *idx_cds, *idx_utr, *idx_exon, *idx_tscript; member
1143 regidx_push(args->idx_tscript, chr_beg, chr_end, tr->beg, tr->end, &tr); in tscript_init_cds()
1296 args->idx_tscript = regidx_init(NULL, NULL, regidx_free_tscript, sizeof(tscript_t*), NULL); in init_gff()
1354 regidx_nregs(args->idx_tscript), in init_gff()
1475 regidx_destroy(args->idx_tscript); in destroy_data()
3921 if ( !regidx_overlap(args->idx_tscript,chr,rec->pos,rec->pos+rec->rlen, args->itr) ) return 0; in test_tscript()
4026 if ( !hit && regidx_overlap(args->idx_tscript,chr,beg,end, args->itr) ) in test_symbolic_alt()
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| H A D | csq.c.pysam.c | 568 regidx_t *idx_cds, *idx_utr, *idx_exon, *idx_tscript; member
1145 regidx_push(args->idx_tscript, chr_beg, chr_end, tr->beg, tr->end, &tr); in tscript_init_cds()
1298 args->idx_tscript = regidx_init(NULL, NULL, regidx_free_tscript, sizeof(tscript_t*), NULL); in init_gff()
1356 regidx_nregs(args->idx_tscript), in init_gff()
1477 regidx_destroy(args->idx_tscript); in destroy_data()
3923 if ( !regidx_overlap(args->idx_tscript,chr,rec->pos,rec->pos+rec->rlen, args->itr) ) return 0; in test_tscript()
4028 if ( !hit && regidx_overlap(args->idx_tscript,chr,beg,end, args->itr) ) in test_symbolic_alt()
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