| /dports/biology/mmseqs2/MMseqs2-13-45111/src/prefiltering/ |
| H A D | IndexBuilder.cpp | 103 Indexer idxer(static_cast<unsigned int>(indexTable->getAlphabetSize()), seq->getKmerSize()); in fillDatabase()
165 … totalKmerCount += indexTable->addKmerCount(&s, &idxer, buffer, kmerThr, idScoreLookup); in fillDatabase()
221 Indexer idxer(static_cast<unsigned int>(indexTable->getAlphabetSize()), seq->getKmerSize()); in fillDatabase()
238 indexTable->addSimilarSequence(&s, generator, &buffer, bufferSize, &idxer); in fillDatabase()
241 indexTable->addSequence(&s, &idxer, &buffer, bufferSize, kmerThr, idScoreLookup); in fillDatabase()
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| H A D | IndexTable.h | 130 size_t addKmerCount(Sequence *s, Indexer *idxer, unsigned int *seqKmerPosBuffer, in addKmerCount() argument
150 unsigned int kmerIdx = idxer->int2index(kmer, 0, kmerSize); in addKmerCount()
298 … KmerGenerator* kmerGenerator, IndexEntryLocalTmp ** buffer, size_t &bufferSize, Indexer * idxer) { in addSimilarSequence() argument
301 idxer->reset(); in addSimilarSequence()
341 void addSequence (Sequence* s, Indexer * idxer, in addSequence() argument
346 idxer->reset(); in addSequence()
364 unsigned int kmerIdx = idxer->int2index(kmer, 0, kmerSize); in addSequence()
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| /dports/science/py-dipy/dipy-1.4.1/dipy/align/ |
| H A D | _public.py | 688 idxer = np.zeros(series.shape[-1]).astype(bool)
689 idxer[ref] = True
690 ref = series[..., idxer].squeeze()
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| /dports/biology/mmseqs2/MMseqs2-13-45111/src/util/ |
| H A D | alignbykmer.cpp | 176 Indexer idxer(subMat->alphabetSize, par.kmerSize); in alignbykmer() local
203 unsigned short kmerIdx = idxer.int2index(kmer); in alignbykmer()
227 unsigned short kmerIdx = idxer.int2index(kmer); in alignbykmer()
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| /dports/textproc/redisearch/RediSearch-2.2.5/src/ |
| H A D | indexer.c | 445 #define SHOULD_STOP(idxer) ((idxer)->options & INDEXER_STOPPED) argument
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| /dports/textproc/redisearch20/RediSearch-2.0.15/src/ |
| H A D | indexer.c | 447 #define SHOULD_STOP(idxer) ((idxer)->options & INDEXER_STOPPED) argument
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| /dports/textproc/redisearch16/RediSearch-1.6.16/src/ |
| H A D | indexer.c | 479 #define SHOULD_STOP(idxer) ((idxer)->options & INDEXER_STOPPED) argument
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| /dports/math/py-pandas/pandas-1.2.5/pandas/_libs/ |
| H A D | groupby.pyx | 298 int64_t lab, idxer, idxer_slot
333 idxer = label_indexer[lab, idxer_slot]
336 out[ii] = idxer
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| /dports/biology/mmseqs2/MMseqs2-13-45111/src/linclust/ |
| H A D | kmermatcher.cpp | 106 Indexer idxer(subMat->alphabetSize - 1, par.kmerSize); in fillKmerPositionArray() local
195 uint64_t kmerIdx = idxer.int2index(kmer, 0, par.kmerSize); in fillKmerPositionArray()
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| /dports/math/py-pandas/pandas-1.2.5/pandas/tests/frame/indexing/ |
| H A D | test_indexing.py | 1457 def test_loc_setitem_datetimeindex_tz(self, idxer, tz_naive_fixture):
1463 result.loc[:, idxer] = expected
|