/dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/index/ |
H A D | test_index_base.cpp | 55 SEQAN_ASSERT(indexCreate(this->index)); in SEQAN_TYPED_TEST() 59 SEQAN_ASSERT_NOT(indexCreate(this->index)); in SEQAN_TYPED_TEST() 91 indexCreate(this->index); in SEQAN_TYPED_TEST() 103 indexCreate(this->index); in SEQAN_TYPED_TEST()
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H A D | test_index_creation.h | 117 indexCreate(index1, EsaSA(), Skew7()); in SEQAN_DEFINE_TEST() 118 indexCreate(index2, EsaSA(), SAQSort()); in SEQAN_DEFINE_TEST()
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H A D | test_qgram_index.h | 222 indexCreate(index, QGramSADir()); in SEQAN_DEFINE_TEST() 289 indexCreate(refIndex, QGramSADir()); in SEQAN_DEFINE_TEST()
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H A D | test_find_backtracking.h | 153 indexCreate(patternIndex, FibreSA(), Trie()); in SEQAN_DEFINE_TEST() 200 indexCreate(patternIndex, FibreSA(), Trie()); in SEQAN_DEFINE_TEST()
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H A D | test_index_view.h | 123 indexCreate(index, FibreSA()); in SEQAN_DEFINE_TEST()
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H A D | test_stree_iterators.h | 737 indexCreate(index, FibreSA(), Trie()); in SEQAN_DEFINE_TEST() 758 indexCreate(index, WotdDir(), Trie()); in SEQAN_DEFINE_TEST()
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/dports/biology/seqan/seqan-library-2.4.0/include/seqan/index/ |
H A D | index_bifm.h | 57 inline bool indexCreate(Index<TText, BidirectionalIndex<FMIndex<TSpec, TConfig> > > & index) in indexCreate() function 61 return indexCreate(index.fwd, FibreSALF()) && indexCreate(index.rev, FibreSALF()); in indexCreate()
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H A D | index_bidirectional.h | 125 inline bool indexCreate(Index<TText, BidirectionalIndex<TIndexSpec> > & index, Tag<TFibre>) in indexCreate() function 127 return indexCreate(index.fwd, Tag<TFibre>()) && indexCreate(index.rev, Tag<TFibre>()); in indexCreate()
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H A D | index_shims.h | 612 inline bool indexCreate(Index<TText, TSpec> &index, FibreSA, TSpecAlg const alg) { 619 inline bool indexCreate(Index<TText, TSpec> &index, FibreIsa, FromSortedSa<TParallel> const alg) 627 inline bool indexCreate(Index<TText, TSpec> &index, FibreLcp, TSpecAlg const alg) { 634 inline bool indexCreate(Index<TText, TSpec> &index, FibreLcpe, TSpecAlg const alg) { 643 inline bool indexCreate(Index<TText, TSpec> &index, FibreBwt, Bwt const) { 650 inline bool indexCreate(Index<TText, TSpec> &index, FibreChildtab, Childtab const) { 657 inline bool indexCreate(Index<TText, TSpec> &index, Tag<TFibre> const fibre) { 658 …return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> con… 667 inline bool indexCreate(Index<TText, TSpec> & index, FibreSA, Trie) 726 return indexCreate(index, fibre); // and create table
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H A D | index_fm.h | 429 inline bool indexCreate(Index<TText, FMIndex<TSpec, TConfig> > & index, FibreSALF) 461 inline bool indexCreate(Index<TText, FMIndex<TSpec, TConfig> > & index, FibreSA) 463 return indexCreate(index, FibreSALF()); 467 inline bool indexCreate(Index<TText, FMIndex<TSpec, TConfig> > & index) 469 return indexCreate(index, FibreSALF());
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H A D | index_view.h | 633 indexCreate(Index<ContainerView<TText, TViewSpec>, TSpec> & /* index */, Tag<TFibre> const /* fibre… 641 indexCreate(Index<StringSet<ContainerView<TText, TViewSpec>, TSSetSpec>, TSpec> & /* index */, Tag<… 653 indexCreate(Index<ContainerView<TText, TViewSpec>, FMIndex<TSpec, TConfig> > & /* index */, Tag<TFi… 661 indexCreate(Index<StringSet<ContainerView<TText, TViewSpec>, TSSetSpec>, FMIndex<TSpec, TConfig> > …
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H A D | index_pizzachili.h | 307 indexCreate(Index<TText, PizzaChili<TSpec> >& me, PizzaChiliCompressed const) {
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/index/ |
H A D | index_bifm.h | 57 inline bool indexCreate(Index<TText, BidirectionalIndex<FMIndex<TSpec, TConfig> > > & index) in indexCreate() function 61 return indexCreate(index.fwd, FibreSALF()) && indexCreate(index.rev, FibreSALF()); in indexCreate()
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H A D | index_bidirectional.h | 125 inline bool indexCreate(Index<TText, BidirectionalIndex<TIndexSpec> > & index, Tag<TFibre>) in indexCreate() function 127 return indexCreate(index.fwd, Tag<TFibre>()) && indexCreate(index.rev, Tag<TFibre>()); in indexCreate()
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H A D | index_shims.h | 612 inline bool indexCreate(Index<TText, TSpec> &index, FibreSA, TSpecAlg const alg) { 619 inline bool indexCreate(Index<TText, TSpec> &index, FibreIsa, FromSortedSa<TParallel> const alg) 627 inline bool indexCreate(Index<TText, TSpec> &index, FibreLcp, TSpecAlg const alg) { 634 inline bool indexCreate(Index<TText, TSpec> &index, FibreLcpe, TSpecAlg const alg) { 643 inline bool indexCreate(Index<TText, TSpec> &index, FibreBwt, Bwt const) { 650 inline bool indexCreate(Index<TText, TSpec> &index, FibreChildtab, Childtab const) { 657 inline bool indexCreate(Index<TText, TSpec> &index, Tag<TFibre> const fibre) { 658 …return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> con… 667 inline bool indexCreate(Index<TText, TSpec> & index, FibreSA, Trie) 726 return indexCreate(index, fibre); // and create table
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H A D | index_fm.h | 429 inline bool indexCreate(Index<TText, FMIndex<TSpec, TConfig> > & index, FibreSALF) 461 inline bool indexCreate(Index<TText, FMIndex<TSpec, TConfig> > & index, FibreSA) 463 return indexCreate(index, FibreSALF()); 467 inline bool indexCreate(Index<TText, FMIndex<TSpec, TConfig> > & index) 469 return indexCreate(index, FibreSALF());
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H A D | index_view.h | 633 indexCreate(Index<ContainerView<TText, TViewSpec>, TSpec> & /* index */, Tag<TFibre> const /* fibre… 641 indexCreate(Index<StringSet<ContainerView<TText, TViewSpec>, TSSetSpec>, TSpec> & /* index */, Tag<… 653 indexCreate(Index<ContainerView<TText, TViewSpec>, FMIndex<TSpec, TConfig> > & /* index */, Tag<TFi… 661 indexCreate(Index<StringSet<ContainerView<TText, TViewSpec>, TSSetSpec>, FMIndex<TSpec, TConfig> > …
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H A D | index_pizzachili.h | 307 indexCreate(Index<TText, PizzaChili<TSpec> >& me, PizzaChiliCompressed const) {
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/index/ |
H A D | index_shims.h | 633 inline bool indexCreate(Index<TText, TSpec> &index, FibreSA, TSpecAlg const alg) { 641 inline bool indexCreate(Index<TText, TSpec> &index, FibreIsa, FromSortedSa<TParallel> const alg) 649 inline bool indexCreate(Index<TText, TSpec> &index, FibreLcp, TSpecAlg const alg) { 657 inline bool indexCreate(Index<TText, TSpec> &index, FibreLcpe, TSpecAlg const alg) { 667 inline bool indexCreate(Index<TText, TSpec> &index, FibreBwt, Bwt const) { 675 inline bool indexCreate(Index<TText, TSpec> &index, FibreChildtab, Childtab const) { 683 inline bool indexCreate(Index<TText, TSpec> &index, Tag<TFibre> const fibre) { 685 …return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> con… 694 inline bool indexCreate(Index<TText, TSpec> & index, FibreSA, Trie) 772 return indexCreate(index, fibre); // and create table
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H A D | index_fm.h | 367 inline bool indexCreate(Index<TText, FMIndex<TSpec, TConfig> > & index, FibreSALF) 398 inline bool indexCreate(Index<TText, FMIndex<TSpec, TConfig> > & index, FibreSA) 400 return indexCreate(index, FibreSALF()); 404 inline bool indexCreate(Index<TText, FMIndex<TSpec, TConfig> > & index) 406 return indexCreate(index, FibreSALF());
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H A D | index_view.h | 633 indexCreate(Index<ContainerView<TText, TViewSpec>, TSpec> & /* index */, Tag<TFibre> const /* fibre… 641 indexCreate(Index<StringSet<ContainerView<TText, TViewSpec>, TSSetSpec>, TSpec> & /* index */, Tag<… 653 indexCreate(Index<ContainerView<TText, TViewSpec>, FMIndex<TSpec, TConfig> > & /* index */, Tag<TFi… 661 indexCreate(Index<StringSet<ContainerView<TText, TViewSpec>, TSSetSpec>, FMIndex<TSpec, TConfig> > …
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/dports/biology/seqan1/seqan-1.3.1/seqan/index/ |
H A D | index_shims.h | 570 inline bool indexCreate(Index<TText, TSpec> &index, FibreSA, TSpecAlg const alg) { 578 inline bool indexCreate(Index<TText, TSpec> &index, FibreLcp, TSpecAlg const alg) { 586 inline bool indexCreate(Index<TText, TSpec> &index, FibreLcpe, TSpecAlg const alg) { 596 inline bool indexCreate(Index<TText, TSpec> &index, FibreBwt, Bwt const) { 604 inline bool indexCreate(Index<TText, TSpec> &index, FibreChildtab, Childtab const) { 612 inline bool indexCreate(Index<TText, TSpec> &index, Tag<TFibre> const fibre) { 614 …return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> con… 660 return indexCreate(index, fibre); // and create table
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/dports/biology/seqan/seqan-library-2.4.0/share/doc/seqan/html/demos/dox/index/ |
H A D | open_save.cpp | 17 indexCreate(saveIndex, FibreSA()); in main()
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/demos/dox/index/ |
H A D | open_save.cpp | 17 indexCreate(saveIndex, FibreSA()); in main()
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/manual/attic/HowTo/ |
H A D | SpecializeSeqanClasses.rst | 32 | indexCreate | Creates a specific index table. |
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