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Searched refs:indexCreate (Results 1 – 25 of 45) sorted by relevance

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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/index/
H A Dtest_index_base.cpp55 SEQAN_ASSERT(indexCreate(this->index)); in SEQAN_TYPED_TEST()
59 SEQAN_ASSERT_NOT(indexCreate(this->index)); in SEQAN_TYPED_TEST()
91 indexCreate(this->index); in SEQAN_TYPED_TEST()
103 indexCreate(this->index); in SEQAN_TYPED_TEST()
H A Dtest_index_creation.h117 indexCreate(index1, EsaSA(), Skew7()); in SEQAN_DEFINE_TEST()
118 indexCreate(index2, EsaSA(), SAQSort()); in SEQAN_DEFINE_TEST()
H A Dtest_qgram_index.h222 indexCreate(index, QGramSADir()); in SEQAN_DEFINE_TEST()
289 indexCreate(refIndex, QGramSADir()); in SEQAN_DEFINE_TEST()
H A Dtest_find_backtracking.h153 indexCreate(patternIndex, FibreSA(), Trie()); in SEQAN_DEFINE_TEST()
200 indexCreate(patternIndex, FibreSA(), Trie()); in SEQAN_DEFINE_TEST()
H A Dtest_index_view.h123 indexCreate(index, FibreSA()); in SEQAN_DEFINE_TEST()
H A Dtest_stree_iterators.h737 indexCreate(index, FibreSA(), Trie()); in SEQAN_DEFINE_TEST()
758 indexCreate(index, WotdDir(), Trie()); in SEQAN_DEFINE_TEST()
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/index/
H A Dindex_bifm.h57 inline bool indexCreate(Index<TText, BidirectionalIndex<FMIndex<TSpec, TConfig> > > & index) in indexCreate() function
61 return indexCreate(index.fwd, FibreSALF()) && indexCreate(index.rev, FibreSALF()); in indexCreate()
H A Dindex_bidirectional.h125 inline bool indexCreate(Index<TText, BidirectionalIndex<TIndexSpec> > & index, Tag<TFibre>) in indexCreate() function
127 return indexCreate(index.fwd, Tag<TFibre>()) && indexCreate(index.rev, Tag<TFibre>()); in indexCreate()
H A Dindex_shims.h612 inline bool indexCreate(Index<TText, TSpec> &index, FibreSA, TSpecAlg const alg) {
619 inline bool indexCreate(Index<TText, TSpec> &index, FibreIsa, FromSortedSa<TParallel> const alg)
627 inline bool indexCreate(Index<TText, TSpec> &index, FibreLcp, TSpecAlg const alg) {
634 inline bool indexCreate(Index<TText, TSpec> &index, FibreLcpe, TSpecAlg const alg) {
643 inline bool indexCreate(Index<TText, TSpec> &index, FibreBwt, Bwt const) {
650 inline bool indexCreate(Index<TText, TSpec> &index, FibreChildtab, Childtab const) {
657 inline bool indexCreate(Index<TText, TSpec> &index, Tag<TFibre> const fibre) {
658 …return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> con…
667 inline bool indexCreate(Index<TText, TSpec> & index, FibreSA, Trie)
726 return indexCreate(index, fibre); // and create table
H A Dindex_fm.h429 inline bool indexCreate(Index<TText, FMIndex<TSpec, TConfig> > & index, FibreSALF)
461 inline bool indexCreate(Index<TText, FMIndex<TSpec, TConfig> > & index, FibreSA)
463 return indexCreate(index, FibreSALF());
467 inline bool indexCreate(Index<TText, FMIndex<TSpec, TConfig> > & index)
469 return indexCreate(index, FibreSALF());
H A Dindex_view.h633 indexCreate(Index<ContainerView<TText, TViewSpec>, TSpec> & /* index */, Tag<TFibre> const /* fibre…
641 indexCreate(Index<StringSet<ContainerView<TText, TViewSpec>, TSSetSpec>, TSpec> & /* index */, Tag<…
653 indexCreate(Index<ContainerView<TText, TViewSpec>, FMIndex<TSpec, TConfig> > & /* index */, Tag<TFi…
661 indexCreate(Index<StringSet<ContainerView<TText, TViewSpec>, TSSetSpec>, FMIndex<TSpec, TConfig> > …
H A Dindex_pizzachili.h307 indexCreate(Index<TText, PizzaChili<TSpec> >& me, PizzaChiliCompressed const) {
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/index/
H A Dindex_bifm.h57 inline bool indexCreate(Index<TText, BidirectionalIndex<FMIndex<TSpec, TConfig> > > & index) in indexCreate() function
61 return indexCreate(index.fwd, FibreSALF()) && indexCreate(index.rev, FibreSALF()); in indexCreate()
H A Dindex_bidirectional.h125 inline bool indexCreate(Index<TText, BidirectionalIndex<TIndexSpec> > & index, Tag<TFibre>) in indexCreate() function
127 return indexCreate(index.fwd, Tag<TFibre>()) && indexCreate(index.rev, Tag<TFibre>()); in indexCreate()
H A Dindex_shims.h612 inline bool indexCreate(Index<TText, TSpec> &index, FibreSA, TSpecAlg const alg) {
619 inline bool indexCreate(Index<TText, TSpec> &index, FibreIsa, FromSortedSa<TParallel> const alg)
627 inline bool indexCreate(Index<TText, TSpec> &index, FibreLcp, TSpecAlg const alg) {
634 inline bool indexCreate(Index<TText, TSpec> &index, FibreLcpe, TSpecAlg const alg) {
643 inline bool indexCreate(Index<TText, TSpec> &index, FibreBwt, Bwt const) {
650 inline bool indexCreate(Index<TText, TSpec> &index, FibreChildtab, Childtab const) {
657 inline bool indexCreate(Index<TText, TSpec> &index, Tag<TFibre> const fibre) {
658 …return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> con…
667 inline bool indexCreate(Index<TText, TSpec> & index, FibreSA, Trie)
726 return indexCreate(index, fibre); // and create table
H A Dindex_fm.h429 inline bool indexCreate(Index<TText, FMIndex<TSpec, TConfig> > & index, FibreSALF)
461 inline bool indexCreate(Index<TText, FMIndex<TSpec, TConfig> > & index, FibreSA)
463 return indexCreate(index, FibreSALF());
467 inline bool indexCreate(Index<TText, FMIndex<TSpec, TConfig> > & index)
469 return indexCreate(index, FibreSALF());
H A Dindex_view.h633 indexCreate(Index<ContainerView<TText, TViewSpec>, TSpec> & /* index */, Tag<TFibre> const /* fibre…
641 indexCreate(Index<StringSet<ContainerView<TText, TViewSpec>, TSSetSpec>, TSpec> & /* index */, Tag<…
653 indexCreate(Index<ContainerView<TText, TViewSpec>, FMIndex<TSpec, TConfig> > & /* index */, Tag<TFi…
661 indexCreate(Index<StringSet<ContainerView<TText, TViewSpec>, TSSetSpec>, FMIndex<TSpec, TConfig> > …
H A Dindex_pizzachili.h307 indexCreate(Index<TText, PizzaChili<TSpec> >& me, PizzaChiliCompressed const) {
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/index/
H A Dindex_shims.h633 inline bool indexCreate(Index<TText, TSpec> &index, FibreSA, TSpecAlg const alg) {
641 inline bool indexCreate(Index<TText, TSpec> &index, FibreIsa, FromSortedSa<TParallel> const alg)
649 inline bool indexCreate(Index<TText, TSpec> &index, FibreLcp, TSpecAlg const alg) {
657 inline bool indexCreate(Index<TText, TSpec> &index, FibreLcpe, TSpecAlg const alg) {
667 inline bool indexCreate(Index<TText, TSpec> &index, FibreBwt, Bwt const) {
675 inline bool indexCreate(Index<TText, TSpec> &index, FibreChildtab, Childtab const) {
683 inline bool indexCreate(Index<TText, TSpec> &index, Tag<TFibre> const fibre) {
685 …return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> con…
694 inline bool indexCreate(Index<TText, TSpec> & index, FibreSA, Trie)
772 return indexCreate(index, fibre); // and create table
H A Dindex_fm.h367 inline bool indexCreate(Index<TText, FMIndex<TSpec, TConfig> > & index, FibreSALF)
398 inline bool indexCreate(Index<TText, FMIndex<TSpec, TConfig> > & index, FibreSA)
400 return indexCreate(index, FibreSALF());
404 inline bool indexCreate(Index<TText, FMIndex<TSpec, TConfig> > & index)
406 return indexCreate(index, FibreSALF());
H A Dindex_view.h633 indexCreate(Index<ContainerView<TText, TViewSpec>, TSpec> & /* index */, Tag<TFibre> const /* fibre…
641 indexCreate(Index<StringSet<ContainerView<TText, TViewSpec>, TSSetSpec>, TSpec> & /* index */, Tag<…
653 indexCreate(Index<ContainerView<TText, TViewSpec>, FMIndex<TSpec, TConfig> > & /* index */, Tag<TFi…
661 indexCreate(Index<StringSet<ContainerView<TText, TViewSpec>, TSSetSpec>, FMIndex<TSpec, TConfig> > …
/dports/biology/seqan1/seqan-1.3.1/seqan/index/
H A Dindex_shims.h570 inline bool indexCreate(Index<TText, TSpec> &index, FibreSA, TSpecAlg const alg) {
578 inline bool indexCreate(Index<TText, TSpec> &index, FibreLcp, TSpecAlg const alg) {
586 inline bool indexCreate(Index<TText, TSpec> &index, FibreLcpe, TSpecAlg const alg) {
596 inline bool indexCreate(Index<TText, TSpec> &index, FibreBwt, Bwt const) {
604 inline bool indexCreate(Index<TText, TSpec> &index, FibreChildtab, Childtab const) {
612 inline bool indexCreate(Index<TText, TSpec> &index, Tag<TFibre> const fibre) {
614 …return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> con…
660 return indexCreate(index, fibre); // and create table
/dports/biology/seqan/seqan-library-2.4.0/share/doc/seqan/html/demos/dox/index/
H A Dopen_save.cpp17 indexCreate(saveIndex, FibreSA()); in main()
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/demos/dox/index/
H A Dopen_save.cpp17 indexCreate(saveIndex, FibreSA()); in main()
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/manual/attic/HowTo/
H A DSpecializeSeqanClasses.rst32 | indexCreate | Creates a specific index table. |

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