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Searched refs:indivs (Results 1 – 8 of 8) sorted by relevance

/dports/biology/bolt-lmm/BOLT-LMM_v2.3.4/example/
H A Drun_example.sh20 --dosageFidIidFile=EUR_subset.dosage.indivs \
23 --impute2FidIidFile=EUR_subset.impute2.indivs \
/dports/biology/bolt-lmm/BOLT-LMM_v2.3.4/src/
H A DSnpData.hpp71 std::vector <IndivInfo> indivs; // [VECTOR]: N member in LMM::SnpData
83 const std::vector <int> &indivs) const;
85 bool fillSnpSubRowNorm1(float x[], uint64 m, const std::vector <int> &indivs) const;
H A DSnpData.cpp273 bedIndivToRemoveIndex[nbed] = indivs.size(); in processIndivs()
274 FID_IID_to_ind[bedIndivs[nbed].famID + " " + bedIndivs[nbed].indivID] = indivs.size(); in processIndivs()
275 indivs.push_back(bedIndivs[nbed]); in processIndivs()
280 N = indivs.size(); in processIndivs()
729 cout << "Filtering indiv " << indivs[n].famID << " " << indivs[n].indivID << ": " in SnpData()
824 for (uint64 n = 0; n < N; n++) phenos[n] = indivs[n].pheno; in getFamPhenos()
858 fout << indivs[n].famID << "\t" << indivs[n].indivID << "\t" << indivs[n].paternalID << "\t" in writeFam()
859 << indivs[n].maternalID << "\t" << indivs[n].sex << "\t" in writeFam()
/dports/biology/mapm3/mapm3-3.0_1/quant/
H A Dqraw.c497 int indivs, n_loci, *order;
509 for(k=0;k<indivs;k++)
526 for (k=0; k<indivs; k++) {
565 void read_quant_trait(fp,num,indivs) in read_quant_trait() argument
567 int num, indivs;
584 for (i=0; i<indivs; i++) {
662 void read_oldmap_locus(fp,num,indivs) in read_oldmap_locus() argument
664 int num, indivs;
676 for (i=0; i<indivs; i++) {
688 int num, indivs;
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/dports/biology/mapm3/mapm3-3.0_1/mapm/
H A Dstate.c485 int indivs, codom, have_indivs=FALSE, have_cd=FALSE; in set_inf_threshold() local
492 if (!itoken(&args,0,&indivs) || in set_inf_threshold()
493 !irange(&indivs,3,raw.data.f2.num_indivs)) in set_inf_threshold()
508 if (have_indivs) npt_min_indivs=indivs; in set_inf_threshold()
/dports/biology/lamarc/lamarc-2.1.8/src/datalike/
H A Dregion.h166 void PruneSamePhaseUnknownSites(IndVec& indivs) const;
H A Dregion.cpp823 void Region::PruneSamePhaseUnknownSites(IndVec& indivs) const in PruneSamePhaseUnknownSites()
826 for(ind = indivs.begin(); ind != indivs.end(); ++ind) in PruneSamePhaseUnknownSites()
/dports/net-im/scli/scli-0.6.5/
H A Dscli879 indivs = self._get_recipients()
881 indivs = self._get_recipients_v1()
894 return indivs, groups
975 indivs = []
985 indivs.append(cont)
987 return indivs
1056 self.indivs = set(Contact(c) for c in indivs_dicts)
1058 self.map = {c.id: c for c in self.indivs | self.groups}
2271 cnts = sorted(self._contacts.indivs, key=sorter)