Searched refs:indivs (Results 1 – 8 of 8) sorted by relevance
/dports/biology/bolt-lmm/BOLT-LMM_v2.3.4/example/ |
H A D | run_example.sh | 20 --dosageFidIidFile=EUR_subset.dosage.indivs \ 23 --impute2FidIidFile=EUR_subset.impute2.indivs \
|
/dports/biology/bolt-lmm/BOLT-LMM_v2.3.4/src/ |
H A D | SnpData.hpp | 71 std::vector <IndivInfo> indivs; // [VECTOR]: N member in LMM::SnpData 83 const std::vector <int> &indivs) const; 85 bool fillSnpSubRowNorm1(float x[], uint64 m, const std::vector <int> &indivs) const;
|
H A D | SnpData.cpp | 273 bedIndivToRemoveIndex[nbed] = indivs.size(); in processIndivs() 274 FID_IID_to_ind[bedIndivs[nbed].famID + " " + bedIndivs[nbed].indivID] = indivs.size(); in processIndivs() 275 indivs.push_back(bedIndivs[nbed]); in processIndivs() 280 N = indivs.size(); in processIndivs() 729 cout << "Filtering indiv " << indivs[n].famID << " " << indivs[n].indivID << ": " in SnpData() 824 for (uint64 n = 0; n < N; n++) phenos[n] = indivs[n].pheno; in getFamPhenos() 858 fout << indivs[n].famID << "\t" << indivs[n].indivID << "\t" << indivs[n].paternalID << "\t" in writeFam() 859 << indivs[n].maternalID << "\t" << indivs[n].sex << "\t" in writeFam()
|
/dports/biology/mapm3/mapm3-3.0_1/quant/ |
H A D | qraw.c | 497 int indivs, n_loci, *order; 509 for(k=0;k<indivs;k++) 526 for (k=0; k<indivs; k++) { 565 void read_quant_trait(fp,num,indivs) in read_quant_trait() argument 567 int num, indivs; 584 for (i=0; i<indivs; i++) { 662 void read_oldmap_locus(fp,num,indivs) in read_oldmap_locus() argument 664 int num, indivs; 676 for (i=0; i<indivs; i++) { 688 int num, indivs; [all …]
|
/dports/biology/mapm3/mapm3-3.0_1/mapm/ |
H A D | state.c | 485 int indivs, codom, have_indivs=FALSE, have_cd=FALSE; in set_inf_threshold() local 492 if (!itoken(&args,0,&indivs) || in set_inf_threshold() 493 !irange(&indivs,3,raw.data.f2.num_indivs)) in set_inf_threshold() 508 if (have_indivs) npt_min_indivs=indivs; in set_inf_threshold()
|
/dports/biology/lamarc/lamarc-2.1.8/src/datalike/ |
H A D | region.h | 166 void PruneSamePhaseUnknownSites(IndVec& indivs) const;
|
H A D | region.cpp | 823 void Region::PruneSamePhaseUnknownSites(IndVec& indivs) const in PruneSamePhaseUnknownSites() 826 for(ind = indivs.begin(); ind != indivs.end(); ++ind) in PruneSamePhaseUnknownSites()
|
/dports/net-im/scli/scli-0.6.5/ |
H A D | scli | 879 indivs = self._get_recipients() 881 indivs = self._get_recipients_v1() 894 return indivs, groups 975 indivs = [] 985 indivs.append(cont) 987 return indivs 1056 self.indivs = set(Contact(c) for c in indivs_dicts) 1058 self.map = {c.id: c for c in self.indivs | self.groups} 2271 cnts = sorted(self._contacts.indivs, key=sorter)
|