/dports/biology/p5-BioPerl/BioPerl-1.7.7/bin/ |
H A D | bp_sreformat | 36 my ($input,$output,$informat,$outformat,$msa,$special); 42 'if|informat:s' => \$informat, 48 unless( defined $informat && defined $outformat ) { 50 defined $informat ? $informat : "''" , 69 if( $informat =~ /nexus|phylip|clustal|maf|stockholm|bl2seq|msf/ || 77 $in = new Bio::AlignIO(-format => $informat, -file => $input); 79 $in = new Bio::AlignIO(-format => $informat, -fh => \*ARGV); 83 die("Unknown MSA format to bioperl $informat\n"); 104 $in = new Bio::SeqIO(-format => $informat, -file => $input); 106 $in = new Bio::SeqIO(-format => $informat, -fh => \*ARGV); [all …]
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H A D | bp_dbsplit | 66 my ($informat,$outformat,$infile) = ( 'fasta', 'fasta'); 70 'if:s' => \$informat, 84 -format => $informat || 'fasta'); 87 -format=> $informat); 89 $in = new Bio::SeqIO(-format=> $informat);
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/dports/science/berkeleygw/BGW-2.0.0/MeanField/Utilities/ |
H A D | wfn_time_reversal.f90 | 48 logical :: informat variable 74 informat = .true. 77 informat = .false. 161 call read_gvectors (7, informat, gvec%ng, gvec%ng, gvec%components) 162 call write_gvectors(8, informat, gvec%ng, gvec%ng, gvec%components) 181 call read_gvectors (7, informat, kp%ngk(ik), kp%ngkmax, gvec_kpt%components) 182 call write_gvectors(8, informat, kp%ngk(ik), kp%ngkmax, gvec_kpt%components) 199 call read_gvectors(7, informat, gvec%ng, gvec%ng, gvec%components) 209 call write_gvectors(8, informat, kp%ngk(ik), kp%ngkmax, new_gvecs) 216 dont_read = .not. time_reversible(ik) .and. .not. informat) [all …]
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H A D | wfn_dotproduct.f90 | 48 logical :: informat variable 78 informat = .true. 81 informat = .false. 128 call read_gvectors(7, informat, mf1%gvec%ng, mf1%gvec%ng, mf1%gvec%components) 160 …call read_gvectors(7, informat, mf1%kp%ngk(ik1), ngkmax, gvec_kpt%components, dont_read=.not.infor… 192 …call read_gvectors(8, informat, mf2%gvec%ng, mf2%gvec%ng, mf2%gvec%components, dont_read = .not. i… 195 …call read_gvectors(8, informat, mf2%kp%ngk(ik3), ngkmax, gvec_kpt%components, dont_read = .not. in… 199 dwfn2(:,:,ib2), dont_read =.not.informat) 202 zwfn2(:,:,ib2), dont_read =.not.informat) 262 dont_read = (ik2 == 0) .and. .not. informat, gindex = gindex1) [all …]
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H A D | mf_convert.f90 | 31 logical :: informat, outformat variable 55 informat = .true. 60 informat = .false. 76 …call read_header_type(7, informat, sheader, iflavor, kp, gvec, syms, crys, dont_warn_kgrid = .true… 100 call read_gvectors(7, informat, gvec%ng, gvec%ng, gvec%components) 119 call read_gvectors(7, informat, kp%ngk(ik), kp%ngkmax, gvec%components) 124 call read_real_data(7, informat, kp%ngk(ik), kp%ngkmax, kp%nspin, dwfn) 127 call read_complex_data(7, informat, kp%ngk(ik), kp%ngkmax, kp%nspin*kp%nspinor, zwfn) 134 call read_real_data(7, informat, gvec%ng, gvec%ng, kp%nspin, dwfn) 137 call read_complex_data(7, informat, gvec%ng, gvec%ng, kp%nspin, zwfn)
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H A D | real2complex.f90 | 32 logical :: informat, outformat variable 54 informat = .false. 67 …call read_header_type(7, informat, sheader, iflavor, kp, gvec, syms, crys, dont_warn_kgrid = .true… 92 call read_gvectors(7, informat, gvec%ng, gvec%ng, gvec%components) 105 call read_gvectors(7, informat, kp%ngk(ik), kp%ngkmax, gvec%components) 109 call read_real_data(7, informat, kp%ngk(ik), kp%ngkmax, kp%nspin, dwfn) 115 call read_real_data(7, informat, gvec%ng, gvec%ng, kp%nspin, dwfn)
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/dports/biology/hhsuite/hh-suite-3.3.0/scripts/ |
H A D | reformat.pl | 93 my $informat=""; 175 $informat=$1; 178 $informat=lc($1); 179 if ($informat eq "aln") {$informat="clu";} 180 elsif ($informat eq "fa") {$informat="fas";} 181 elsif ($informat eq "fasta") {$informat="fas";} 249 if ($informat eq "fas" || $informat eq "a2m" || $informat eq "a3m") 292 elsif ($informat eq "sto") 335 elsif ($informat eq "clu") 402 elsif ($informat eq "psi") [all …]
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/dports/textproc/R-cran-rbibutils/rbibutils/tests/testthat/ |
H A D | test-convert.R | 60 expect_error(bibConvert(tmp_ads, tmp_bib2, informat = "ads"), 67 bibConvert(tmp_bbl, tmp_bib2, informat = "biblatex", options = c(nb = "")) 81 informat = "ebi") 88 bibConvert(tmp_end, tmp_bib2, informat = "end", options = c(nb = "")) 105 bibConvert(endx_in, tmp_bib3, informat = "endx", options = c(nb = "")) 116 bibConvert(med_in, tmp_bib, informat = "med") 196 bibConvert(tmp_wordbib, tmp_bib3, informat = "word") 352 bibConvert(tmp_end, tmp_bib2, informat = "end", options = c(nb = "")) 360 bibConvert(med_in, tmp_bib2, informat = "med") 390 bibConvert(tmp_word , tmp_xml2, informat = "word") [all …]
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/dports/science/py-pymol/pymol-open-source-2.4.0/modules/pymol/ |
H A D | seqalign.py | 65 informat = 'clustal' 67 informat = 'pir' 69 informat = 'fasta' 71 informat = 'stockholm' 73 informat = 'fatcat' 75 informat = 'prosmart' 77 informat = 'emboss' 78 return informat
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/dports/textproc/R-cran-rbibutils/rbibutils/R/ |
H A D | convert.R | 1 bibConvert <- function(infile, outfile, informat, outformat, ..., tex, encoding, options){ argument 10 if(missing(informat)){ 12 informat <- switch(ext, 70 if(informat == "xml") 190 if(informat == "word") 191 informat <- "wordbib" 193 wrk <- switch(informat, 215 prg <- paste0(informat, "2xml") 222 bibe <- if(informat == "bibentry") 244 stop("converting a file from format ", informat, " not available yet")
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/dports/games/SRB2/SRB2-SRB2_release_2.2.9/src/ |
H A D | r_picformats.c | 82 if (informat == PICFMT_NONE) in Picture_Convert() 86 else if (informat == outformat) in Picture_Convert() 129 if (informat == PICFMT_NONE) in Picture_PatchConvert() 133 else if (informat == outformat) in Picture_PatchConvert() 143 if (Picture_IsPatchFormat(informat)) in Picture_PatchConvert() 195 switch (informat) in Picture_PatchConvert() 408 if (informat == PICFMT_NONE) in Picture_FlatConvert() 412 else if (informat == outformat) in Picture_FlatConvert() 1282 informat = PICFMT_FLAT32; in Picture_PNGConvert() 1285 informat = PICFMT_FLAT16; in Picture_PNGConvert() [all …]
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/dports/security/vaultwarden/vaultwarden-1.23.1/cargo-crates/openssl-src-300.0.2+3.0.0/openssl/apps/ |
H A D | pkcs8.c | 86 int informat = FORMAT_UNDEF, outformat = FORMAT_PEM, topk8 = 0, pbe_nid = -1; in pkcs8_main() local 105 if (!opt_format(opt_arg(), OPT_FMT_PEMDER, &informat)) in pkcs8_main() 218 informat == FORMAT_UNDEF ? FORMAT_PEM : informat); in pkcs8_main() 226 pkey = load_key(infile, informat, 1, passin, e, "key"); in pkcs8_main() 302 if (informat == FORMAT_PEM || informat == FORMAT_UNDEF) { in pkcs8_main() 304 } else if (informat == FORMAT_ASN1) { in pkcs8_main() 311 if (informat == FORMAT_PEM || informat == FORMAT_UNDEF) { in pkcs8_main() 313 } else if (informat == FORMAT_ASN1) { in pkcs8_main()
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/dports/security/arti/arti-9d0ede26801cdb182daa85c3eb5f0058dc178eb6/cargo-crates/openssl-src-300.0.2+3.0.0/openssl/apps/ |
H A D | pkcs8.c | 86 int informat = FORMAT_UNDEF, outformat = FORMAT_PEM, topk8 = 0, pbe_nid = -1; in pkcs8_main() local 105 if (!opt_format(opt_arg(), OPT_FMT_PEMDER, &informat)) in pkcs8_main() 218 informat == FORMAT_UNDEF ? FORMAT_PEM : informat); in pkcs8_main() 226 pkey = load_key(infile, informat, 1, passin, e, "key"); in pkcs8_main() 302 if (informat == FORMAT_PEM || informat == FORMAT_UNDEF) { in pkcs8_main() 304 } else if (informat == FORMAT_ASN1) { in pkcs8_main() 311 if (informat == FORMAT_PEM || informat == FORMAT_UNDEF) { in pkcs8_main() 313 } else if (informat == FORMAT_ASN1) { in pkcs8_main()
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/dports/security/acmed/acmed-0.18.0/cargo-crates/openssl-src-300.0.2+3.0.0/openssl/apps/ |
H A D | pkcs8.c | 86 int informat = FORMAT_UNDEF, outformat = FORMAT_PEM, topk8 = 0, pbe_nid = -1; in pkcs8_main() local 105 if (!opt_format(opt_arg(), OPT_FMT_PEMDER, &informat)) in pkcs8_main() 218 informat == FORMAT_UNDEF ? FORMAT_PEM : informat); in pkcs8_main() 226 pkey = load_key(infile, informat, 1, passin, e, "key"); in pkcs8_main() 302 if (informat == FORMAT_PEM || informat == FORMAT_UNDEF) { in pkcs8_main() 304 } else if (informat == FORMAT_ASN1) { in pkcs8_main() 311 if (informat == FORMAT_PEM || informat == FORMAT_UNDEF) { in pkcs8_main() 313 } else if (informat == FORMAT_ASN1) { in pkcs8_main()
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/dports/textproc/mdbook-linkcheck/mdbook-linkcheck-0.7.6/cargo-crates/openssl-src-300.0.2+3.0.0/openssl/apps/ |
H A D | pkcs8.c | 86 int informat = FORMAT_UNDEF, outformat = FORMAT_PEM, topk8 = 0, pbe_nid = -1; in pkcs8_main() local 105 if (!opt_format(opt_arg(), OPT_FMT_PEMDER, &informat)) in pkcs8_main() 218 informat == FORMAT_UNDEF ? FORMAT_PEM : informat); in pkcs8_main() 226 pkey = load_key(infile, informat, 1, passin, e, "key"); in pkcs8_main() 302 if (informat == FORMAT_PEM || informat == FORMAT_UNDEF) { in pkcs8_main() 304 } else if (informat == FORMAT_ASN1) { in pkcs8_main() 311 if (informat == FORMAT_PEM || informat == FORMAT_UNDEF) { in pkcs8_main() 313 } else if (informat == FORMAT_ASN1) { in pkcs8_main()
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/dports/security/openssl-devel/openssl-3.0.2/apps/ |
H A D | pkcs8.c | 86 int informat = FORMAT_UNDEF, outformat = FORMAT_PEM, topk8 = 0, pbe_nid = -1; in pkcs8_main() local 105 if (!opt_format(opt_arg(), OPT_FMT_PEMDER, &informat)) in pkcs8_main() 218 informat == FORMAT_UNDEF ? FORMAT_PEM : informat); in pkcs8_main() 226 pkey = load_key(infile, informat, 1, passin, e, "key"); in pkcs8_main() 302 if (informat == FORMAT_PEM || informat == FORMAT_UNDEF) { in pkcs8_main() 304 } else if (informat == FORMAT_ASN1) { in pkcs8_main() 311 if (informat == FORMAT_PEM || informat == FORMAT_UNDEF) { in pkcs8_main() 313 } else if (informat == FORMAT_ASN1) { in pkcs8_main()
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/dports/security/openssl-quictls/openssl-7f2ab56a2b842b8e6fefc7b9d20eb5ff9c6ef151/apps/ |
H A D | pkcs8.c | 86 int informat = FORMAT_UNDEF, outformat = FORMAT_PEM, topk8 = 0, pbe_nid = -1; in pkcs8_main() local 105 if (!opt_format(opt_arg(), OPT_FMT_PEMDER, &informat)) in pkcs8_main() 218 informat == FORMAT_UNDEF ? FORMAT_PEM : informat); in pkcs8_main() 226 pkey = load_key(infile, informat, 1, passin, e, "key"); in pkcs8_main() 302 if (informat == FORMAT_PEM || informat == FORMAT_UNDEF) { in pkcs8_main() 304 } else if (informat == FORMAT_ASN1) { in pkcs8_main() 311 if (informat == FORMAT_PEM || informat == FORMAT_UNDEF) { in pkcs8_main() 313 } else if (informat == FORMAT_ASN1) { in pkcs8_main()
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/dports/emulators/qemu60/qemu-6.0.0/roms/edk2/CryptoPkg/Library/OpensslLib/openssl/apps/ |
H A D | ec.c | 79 int informat = FORMAT_PEM, outformat = FORMAT_PEM, text = 0, noout = 0; in ec_main() local 96 if (!opt_format(opt_arg(), OPT_FMT_ANY, &informat)) in ec_main() 170 if (informat != FORMAT_ENGINE) { in ec_main() 171 in = bio_open_default(infile, 'r', informat); in ec_main() 177 if (informat == FORMAT_ASN1) { in ec_main() 182 } else if (informat == FORMAT_ENGINE) { in ec_main() 185 pkey = load_pubkey(infile, informat, 1, passin, e, "Public Key"); in ec_main() 187 pkey = load_key(infile, informat, 1, passin, e, "Private Key"); in ec_main()
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/dports/devel/cargo-c/cargo-c-0.9.6+cargo-0.58/cargo-crates/openssl-src-111.16.0+1.1.1l/openssl/apps/ |
H A D | ec.c | 79 int informat = FORMAT_PEM, outformat = FORMAT_PEM, text = 0, noout = 0; in ec_main() local 96 if (!opt_format(opt_arg(), OPT_FMT_ANY, &informat)) in ec_main() 170 if (informat != FORMAT_ENGINE) { in ec_main() 171 in = bio_open_default(infile, 'r', informat); in ec_main() 177 if (informat == FORMAT_ASN1) { in ec_main() 182 } else if (informat == FORMAT_ENGINE) { in ec_main() 185 pkey = load_pubkey(infile, informat, 1, passin, e, "Public Key"); in ec_main() 187 pkey = load_key(infile, informat, 1, passin, e, "Private Key"); in ec_main()
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/dports/emulators/qemu42/qemu-4.2.1/roms/edk2/CryptoPkg/Library/OpensslLib/openssl/apps/ |
H A D | ec.c | 83 int informat = FORMAT_PEM, outformat = FORMAT_PEM, text = 0, noout = 0; 100 if (!opt_format(opt_arg(), OPT_FMT_ANY, &informat)) 174 if (informat != FORMAT_ENGINE) { 175 in = bio_open_default(infile, 'r', informat); 181 if (informat == FORMAT_ASN1) { 186 } else if (informat == FORMAT_ENGINE) { 189 pkey = load_pubkey(infile, informat, 1, passin, e, "Public Key"); 191 pkey = load_key(infile, informat, 1, passin, e, "Private Key");
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/dports/emulators/qemu/qemu-6.2.0/roms/edk2/CryptoPkg/Library/OpensslLib/openssl/apps/ |
H A D | ec.c | 79 int informat = FORMAT_PEM, outformat = FORMAT_PEM, text = 0, noout = 0; in ec_main() local 96 if (!opt_format(opt_arg(), OPT_FMT_ANY, &informat)) in ec_main() 170 if (informat != FORMAT_ENGINE) { in ec_main() 171 in = bio_open_default(infile, 'r', informat); in ec_main() 177 if (informat == FORMAT_ASN1) { in ec_main() 182 } else if (informat == FORMAT_ENGINE) { in ec_main() 185 pkey = load_pubkey(infile, informat, 1, passin, e, "Public Key"); in ec_main() 187 pkey = load_key(infile, informat, 1, passin, e, "Private Key"); in ec_main()
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/dports/sysutils/uefi-edk2-qemu/edk2-edk2-stable201911/CryptoPkg/Library/OpensslLib/openssl/apps/ |
H A D | ec.c | 83 int informat = FORMAT_PEM, outformat = FORMAT_PEM, text = 0, noout = 0; 100 if (!opt_format(opt_arg(), OPT_FMT_ANY, &informat)) 174 if (informat != FORMAT_ENGINE) { 175 in = bio_open_default(infile, 'r', informat); 181 if (informat == FORMAT_ASN1) { 186 } else if (informat == FORMAT_ENGINE) { 189 pkey = load_pubkey(infile, informat, 1, passin, e, "Public Key"); 191 pkey = load_key(infile, informat, 1, passin, e, "Private Key");
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/dports/sysutils/vector/vector-0.10.0/cargo-crates/openssl-src-111.9.0+1.1.1g/openssl/apps/ |
H A D | ec.c | 79 int informat = FORMAT_PEM, outformat = FORMAT_PEM, text = 0, noout = 0; in ec_main() local 96 if (!opt_format(opt_arg(), OPT_FMT_ANY, &informat)) in ec_main() 170 if (informat != FORMAT_ENGINE) { in ec_main() 171 in = bio_open_default(infile, 'r', informat); in ec_main() 177 if (informat == FORMAT_ASN1) { in ec_main() 182 } else if (informat == FORMAT_ENGINE) { in ec_main() 185 pkey = load_pubkey(infile, informat, 1, passin, e, "Public Key"); in ec_main() 187 pkey = load_key(infile, informat, 1, passin, e, "Private Key"); in ec_main()
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/dports/emulators/qemu-utils/qemu-4.2.1/roms/edk2/CryptoPkg/Library/OpensslLib/openssl/apps/ |
H A D | ec.c | 83 int informat = FORMAT_PEM, outformat = FORMAT_PEM, text = 0, noout = 0; 100 if (!opt_format(opt_arg(), OPT_FMT_ANY, &informat)) 174 if (informat != FORMAT_ENGINE) { 175 in = bio_open_default(infile, 'r', informat); 181 if (informat == FORMAT_ASN1) { 186 } else if (informat == FORMAT_ENGINE) { 189 pkey = load_pubkey(infile, informat, 1, passin, e, "Public Key"); 191 pkey = load_key(infile, informat, 1, passin, e, "Private Key");
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/dports/security/cargo-audit/rustsec-cargo-audit-v0.15.2/cargo-audit/cargo-crates/openssl-src-111.14.0+1.1.1j/openssl/apps/ |
H A D | ec.c | 79 int informat = FORMAT_PEM, outformat = FORMAT_PEM, text = 0, noout = 0; in ec_main() local 96 if (!opt_format(opt_arg(), OPT_FMT_ANY, &informat)) in ec_main() 170 if (informat != FORMAT_ENGINE) { in ec_main() 171 in = bio_open_default(infile, 'r', informat); in ec_main() 177 if (informat == FORMAT_ASN1) { in ec_main() 182 } else if (informat == FORMAT_ENGINE) { in ec_main() 185 pkey = load_pubkey(infile, informat, 1, passin, e, "Public Key"); in ec_main() 187 pkey = load_key(infile, informat, 1, passin, e, "Private Key"); in ec_main()
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