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/dports/biology/p5-BioPerl/BioPerl-1.7.7/bin/
H A Dbp_sreformat36 my ($input,$output,$informat,$outformat,$msa,$special);
42 'if|informat:s' => \$informat,
48 unless( defined $informat && defined $outformat ) {
50 defined $informat ? $informat : "''" ,
69 if( $informat =~ /nexus|phylip|clustal|maf|stockholm|bl2seq|msf/ ||
77 $in = new Bio::AlignIO(-format => $informat, -file => $input);
79 $in = new Bio::AlignIO(-format => $informat, -fh => \*ARGV);
83 die("Unknown MSA format to bioperl $informat\n");
104 $in = new Bio::SeqIO(-format => $informat, -file => $input);
106 $in = new Bio::SeqIO(-format => $informat, -fh => \*ARGV);
[all …]
H A Dbp_dbsplit66 my ($informat,$outformat,$infile) = ( 'fasta', 'fasta');
70 'if:s' => \$informat,
84 -format => $informat || 'fasta');
87 -format=> $informat);
89 $in = new Bio::SeqIO(-format=> $informat);
/dports/science/berkeleygw/BGW-2.0.0/MeanField/Utilities/
H A Dwfn_time_reversal.f9048 logical :: informat variable
74 informat = .true.
77 informat = .false.
161 call read_gvectors (7, informat, gvec%ng, gvec%ng, gvec%components)
162 call write_gvectors(8, informat, gvec%ng, gvec%ng, gvec%components)
181 call read_gvectors (7, informat, kp%ngk(ik), kp%ngkmax, gvec_kpt%components)
182 call write_gvectors(8, informat, kp%ngk(ik), kp%ngkmax, gvec_kpt%components)
199 call read_gvectors(7, informat, gvec%ng, gvec%ng, gvec%components)
209 call write_gvectors(8, informat, kp%ngk(ik), kp%ngkmax, new_gvecs)
216 dont_read = .not. time_reversible(ik) .and. .not. informat)
[all …]
H A Dwfn_dotproduct.f9048 logical :: informat variable
78 informat = .true.
81 informat = .false.
128 call read_gvectors(7, informat, mf1%gvec%ng, mf1%gvec%ng, mf1%gvec%components)
160 …call read_gvectors(7, informat, mf1%kp%ngk(ik1), ngkmax, gvec_kpt%components, dont_read=.not.infor…
192 …call read_gvectors(8, informat, mf2%gvec%ng, mf2%gvec%ng, mf2%gvec%components, dont_read = .not. i…
195 …call read_gvectors(8, informat, mf2%kp%ngk(ik3), ngkmax, gvec_kpt%components, dont_read = .not. in…
199 dwfn2(:,:,ib2), dont_read =.not.informat)
202 zwfn2(:,:,ib2), dont_read =.not.informat)
262 dont_read = (ik2 == 0) .and. .not. informat, gindex = gindex1)
[all …]
H A Dmf_convert.f9031 logical :: informat, outformat variable
55 informat = .true.
60 informat = .false.
76 …call read_header_type(7, informat, sheader, iflavor, kp, gvec, syms, crys, dont_warn_kgrid = .true…
100 call read_gvectors(7, informat, gvec%ng, gvec%ng, gvec%components)
119 call read_gvectors(7, informat, kp%ngk(ik), kp%ngkmax, gvec%components)
124 call read_real_data(7, informat, kp%ngk(ik), kp%ngkmax, kp%nspin, dwfn)
127 call read_complex_data(7, informat, kp%ngk(ik), kp%ngkmax, kp%nspin*kp%nspinor, zwfn)
134 call read_real_data(7, informat, gvec%ng, gvec%ng, kp%nspin, dwfn)
137 call read_complex_data(7, informat, gvec%ng, gvec%ng, kp%nspin, zwfn)
H A Dreal2complex.f9032 logical :: informat, outformat variable
54 informat = .false.
67 …call read_header_type(7, informat, sheader, iflavor, kp, gvec, syms, crys, dont_warn_kgrid = .true…
92 call read_gvectors(7, informat, gvec%ng, gvec%ng, gvec%components)
105 call read_gvectors(7, informat, kp%ngk(ik), kp%ngkmax, gvec%components)
109 call read_real_data(7, informat, kp%ngk(ik), kp%ngkmax, kp%nspin, dwfn)
115 call read_real_data(7, informat, gvec%ng, gvec%ng, kp%nspin, dwfn)
/dports/biology/hhsuite/hh-suite-3.3.0/scripts/
H A Dreformat.pl93 my $informat="";
175 $informat=$1;
178 $informat=lc($1);
179 if ($informat eq "aln") {$informat="clu";}
180 elsif ($informat eq "fa") {$informat="fas";}
181 elsif ($informat eq "fasta") {$informat="fas";}
249 if ($informat eq "fas" || $informat eq "a2m" || $informat eq "a3m")
292 elsif ($informat eq "sto")
335 elsif ($informat eq "clu")
402 elsif ($informat eq "psi")
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/dports/textproc/R-cran-rbibutils/rbibutils/tests/testthat/
H A Dtest-convert.R60 expect_error(bibConvert(tmp_ads, tmp_bib2, informat = "ads"),
67 bibConvert(tmp_bbl, tmp_bib2, informat = "biblatex", options = c(nb = ""))
81 informat = "ebi")
88 bibConvert(tmp_end, tmp_bib2, informat = "end", options = c(nb = ""))
105 bibConvert(endx_in, tmp_bib3, informat = "endx", options = c(nb = ""))
116 bibConvert(med_in, tmp_bib, informat = "med")
196 bibConvert(tmp_wordbib, tmp_bib3, informat = "word")
352 bibConvert(tmp_end, tmp_bib2, informat = "end", options = c(nb = ""))
360 bibConvert(med_in, tmp_bib2, informat = "med")
390 bibConvert(tmp_word , tmp_xml2, informat = "word")
[all …]
/dports/science/py-pymol/pymol-open-source-2.4.0/modules/pymol/
H A Dseqalign.py65 informat = 'clustal'
67 informat = 'pir'
69 informat = 'fasta'
71 informat = 'stockholm'
73 informat = 'fatcat'
75 informat = 'prosmart'
77 informat = 'emboss'
78 return informat
/dports/textproc/R-cran-rbibutils/rbibutils/R/
H A Dconvert.R1 bibConvert <- function(infile, outfile, informat, outformat, ..., tex, encoding, options){ argument
10 if(missing(informat)){
12 informat <- switch(ext,
70 if(informat == "xml")
190 if(informat == "word")
191 informat <- "wordbib"
193 wrk <- switch(informat,
215 prg <- paste0(informat, "2xml")
222 bibe <- if(informat == "bibentry")
244 stop("converting a file from format ", informat, " not available yet")
/dports/games/SRB2/SRB2-SRB2_release_2.2.9/src/
H A Dr_picformats.c82 if (informat == PICFMT_NONE) in Picture_Convert()
86 else if (informat == outformat) in Picture_Convert()
129 if (informat == PICFMT_NONE) in Picture_PatchConvert()
133 else if (informat == outformat) in Picture_PatchConvert()
143 if (Picture_IsPatchFormat(informat)) in Picture_PatchConvert()
195 switch (informat) in Picture_PatchConvert()
408 if (informat == PICFMT_NONE) in Picture_FlatConvert()
412 else if (informat == outformat) in Picture_FlatConvert()
1282 informat = PICFMT_FLAT32; in Picture_PNGConvert()
1285 informat = PICFMT_FLAT16; in Picture_PNGConvert()
[all …]
/dports/security/vaultwarden/vaultwarden-1.23.1/cargo-crates/openssl-src-300.0.2+3.0.0/openssl/apps/
H A Dpkcs8.c86 int informat = FORMAT_UNDEF, outformat = FORMAT_PEM, topk8 = 0, pbe_nid = -1; in pkcs8_main() local
105 if (!opt_format(opt_arg(), OPT_FMT_PEMDER, &informat)) in pkcs8_main()
218 informat == FORMAT_UNDEF ? FORMAT_PEM : informat); in pkcs8_main()
226 pkey = load_key(infile, informat, 1, passin, e, "key"); in pkcs8_main()
302 if (informat == FORMAT_PEM || informat == FORMAT_UNDEF) { in pkcs8_main()
304 } else if (informat == FORMAT_ASN1) { in pkcs8_main()
311 if (informat == FORMAT_PEM || informat == FORMAT_UNDEF) { in pkcs8_main()
313 } else if (informat == FORMAT_ASN1) { in pkcs8_main()
/dports/security/arti/arti-9d0ede26801cdb182daa85c3eb5f0058dc178eb6/cargo-crates/openssl-src-300.0.2+3.0.0/openssl/apps/
H A Dpkcs8.c86 int informat = FORMAT_UNDEF, outformat = FORMAT_PEM, topk8 = 0, pbe_nid = -1; in pkcs8_main() local
105 if (!opt_format(opt_arg(), OPT_FMT_PEMDER, &informat)) in pkcs8_main()
218 informat == FORMAT_UNDEF ? FORMAT_PEM : informat); in pkcs8_main()
226 pkey = load_key(infile, informat, 1, passin, e, "key"); in pkcs8_main()
302 if (informat == FORMAT_PEM || informat == FORMAT_UNDEF) { in pkcs8_main()
304 } else if (informat == FORMAT_ASN1) { in pkcs8_main()
311 if (informat == FORMAT_PEM || informat == FORMAT_UNDEF) { in pkcs8_main()
313 } else if (informat == FORMAT_ASN1) { in pkcs8_main()
/dports/security/acmed/acmed-0.18.0/cargo-crates/openssl-src-300.0.2+3.0.0/openssl/apps/
H A Dpkcs8.c86 int informat = FORMAT_UNDEF, outformat = FORMAT_PEM, topk8 = 0, pbe_nid = -1; in pkcs8_main() local
105 if (!opt_format(opt_arg(), OPT_FMT_PEMDER, &informat)) in pkcs8_main()
218 informat == FORMAT_UNDEF ? FORMAT_PEM : informat); in pkcs8_main()
226 pkey = load_key(infile, informat, 1, passin, e, "key"); in pkcs8_main()
302 if (informat == FORMAT_PEM || informat == FORMAT_UNDEF) { in pkcs8_main()
304 } else if (informat == FORMAT_ASN1) { in pkcs8_main()
311 if (informat == FORMAT_PEM || informat == FORMAT_UNDEF) { in pkcs8_main()
313 } else if (informat == FORMAT_ASN1) { in pkcs8_main()
/dports/textproc/mdbook-linkcheck/mdbook-linkcheck-0.7.6/cargo-crates/openssl-src-300.0.2+3.0.0/openssl/apps/
H A Dpkcs8.c86 int informat = FORMAT_UNDEF, outformat = FORMAT_PEM, topk8 = 0, pbe_nid = -1; in pkcs8_main() local
105 if (!opt_format(opt_arg(), OPT_FMT_PEMDER, &informat)) in pkcs8_main()
218 informat == FORMAT_UNDEF ? FORMAT_PEM : informat); in pkcs8_main()
226 pkey = load_key(infile, informat, 1, passin, e, "key"); in pkcs8_main()
302 if (informat == FORMAT_PEM || informat == FORMAT_UNDEF) { in pkcs8_main()
304 } else if (informat == FORMAT_ASN1) { in pkcs8_main()
311 if (informat == FORMAT_PEM || informat == FORMAT_UNDEF) { in pkcs8_main()
313 } else if (informat == FORMAT_ASN1) { in pkcs8_main()
/dports/security/openssl-devel/openssl-3.0.2/apps/
H A Dpkcs8.c86 int informat = FORMAT_UNDEF, outformat = FORMAT_PEM, topk8 = 0, pbe_nid = -1; in pkcs8_main() local
105 if (!opt_format(opt_arg(), OPT_FMT_PEMDER, &informat)) in pkcs8_main()
218 informat == FORMAT_UNDEF ? FORMAT_PEM : informat); in pkcs8_main()
226 pkey = load_key(infile, informat, 1, passin, e, "key"); in pkcs8_main()
302 if (informat == FORMAT_PEM || informat == FORMAT_UNDEF) { in pkcs8_main()
304 } else if (informat == FORMAT_ASN1) { in pkcs8_main()
311 if (informat == FORMAT_PEM || informat == FORMAT_UNDEF) { in pkcs8_main()
313 } else if (informat == FORMAT_ASN1) { in pkcs8_main()
/dports/security/openssl-quictls/openssl-7f2ab56a2b842b8e6fefc7b9d20eb5ff9c6ef151/apps/
H A Dpkcs8.c86 int informat = FORMAT_UNDEF, outformat = FORMAT_PEM, topk8 = 0, pbe_nid = -1; in pkcs8_main() local
105 if (!opt_format(opt_arg(), OPT_FMT_PEMDER, &informat)) in pkcs8_main()
218 informat == FORMAT_UNDEF ? FORMAT_PEM : informat); in pkcs8_main()
226 pkey = load_key(infile, informat, 1, passin, e, "key"); in pkcs8_main()
302 if (informat == FORMAT_PEM || informat == FORMAT_UNDEF) { in pkcs8_main()
304 } else if (informat == FORMAT_ASN1) { in pkcs8_main()
311 if (informat == FORMAT_PEM || informat == FORMAT_UNDEF) { in pkcs8_main()
313 } else if (informat == FORMAT_ASN1) { in pkcs8_main()
/dports/emulators/qemu60/qemu-6.0.0/roms/edk2/CryptoPkg/Library/OpensslLib/openssl/apps/
H A Dec.c79 int informat = FORMAT_PEM, outformat = FORMAT_PEM, text = 0, noout = 0; in ec_main() local
96 if (!opt_format(opt_arg(), OPT_FMT_ANY, &informat)) in ec_main()
170 if (informat != FORMAT_ENGINE) { in ec_main()
171 in = bio_open_default(infile, 'r', informat); in ec_main()
177 if (informat == FORMAT_ASN1) { in ec_main()
182 } else if (informat == FORMAT_ENGINE) { in ec_main()
185 pkey = load_pubkey(infile, informat, 1, passin, e, "Public Key"); in ec_main()
187 pkey = load_key(infile, informat, 1, passin, e, "Private Key"); in ec_main()
/dports/devel/cargo-c/cargo-c-0.9.6+cargo-0.58/cargo-crates/openssl-src-111.16.0+1.1.1l/openssl/apps/
H A Dec.c79 int informat = FORMAT_PEM, outformat = FORMAT_PEM, text = 0, noout = 0; in ec_main() local
96 if (!opt_format(opt_arg(), OPT_FMT_ANY, &informat)) in ec_main()
170 if (informat != FORMAT_ENGINE) { in ec_main()
171 in = bio_open_default(infile, 'r', informat); in ec_main()
177 if (informat == FORMAT_ASN1) { in ec_main()
182 } else if (informat == FORMAT_ENGINE) { in ec_main()
185 pkey = load_pubkey(infile, informat, 1, passin, e, "Public Key"); in ec_main()
187 pkey = load_key(infile, informat, 1, passin, e, "Private Key"); in ec_main()
/dports/emulators/qemu42/qemu-4.2.1/roms/edk2/CryptoPkg/Library/OpensslLib/openssl/apps/
H A Dec.c83 int informat = FORMAT_PEM, outformat = FORMAT_PEM, text = 0, noout = 0;
100 if (!opt_format(opt_arg(), OPT_FMT_ANY, &informat))
174 if (informat != FORMAT_ENGINE) {
175 in = bio_open_default(infile, 'r', informat);
181 if (informat == FORMAT_ASN1) {
186 } else if (informat == FORMAT_ENGINE) {
189 pkey = load_pubkey(infile, informat, 1, passin, e, "Public Key");
191 pkey = load_key(infile, informat, 1, passin, e, "Private Key");
/dports/emulators/qemu/qemu-6.2.0/roms/edk2/CryptoPkg/Library/OpensslLib/openssl/apps/
H A Dec.c79 int informat = FORMAT_PEM, outformat = FORMAT_PEM, text = 0, noout = 0; in ec_main() local
96 if (!opt_format(opt_arg(), OPT_FMT_ANY, &informat)) in ec_main()
170 if (informat != FORMAT_ENGINE) { in ec_main()
171 in = bio_open_default(infile, 'r', informat); in ec_main()
177 if (informat == FORMAT_ASN1) { in ec_main()
182 } else if (informat == FORMAT_ENGINE) { in ec_main()
185 pkey = load_pubkey(infile, informat, 1, passin, e, "Public Key"); in ec_main()
187 pkey = load_key(infile, informat, 1, passin, e, "Private Key"); in ec_main()
/dports/sysutils/uefi-edk2-qemu/edk2-edk2-stable201911/CryptoPkg/Library/OpensslLib/openssl/apps/
H A Dec.c83 int informat = FORMAT_PEM, outformat = FORMAT_PEM, text = 0, noout = 0;
100 if (!opt_format(opt_arg(), OPT_FMT_ANY, &informat))
174 if (informat != FORMAT_ENGINE) {
175 in = bio_open_default(infile, 'r', informat);
181 if (informat == FORMAT_ASN1) {
186 } else if (informat == FORMAT_ENGINE) {
189 pkey = load_pubkey(infile, informat, 1, passin, e, "Public Key");
191 pkey = load_key(infile, informat, 1, passin, e, "Private Key");
/dports/sysutils/vector/vector-0.10.0/cargo-crates/openssl-src-111.9.0+1.1.1g/openssl/apps/
H A Dec.c79 int informat = FORMAT_PEM, outformat = FORMAT_PEM, text = 0, noout = 0; in ec_main() local
96 if (!opt_format(opt_arg(), OPT_FMT_ANY, &informat)) in ec_main()
170 if (informat != FORMAT_ENGINE) { in ec_main()
171 in = bio_open_default(infile, 'r', informat); in ec_main()
177 if (informat == FORMAT_ASN1) { in ec_main()
182 } else if (informat == FORMAT_ENGINE) { in ec_main()
185 pkey = load_pubkey(infile, informat, 1, passin, e, "Public Key"); in ec_main()
187 pkey = load_key(infile, informat, 1, passin, e, "Private Key"); in ec_main()
/dports/emulators/qemu-utils/qemu-4.2.1/roms/edk2/CryptoPkg/Library/OpensslLib/openssl/apps/
H A Dec.c83 int informat = FORMAT_PEM, outformat = FORMAT_PEM, text = 0, noout = 0;
100 if (!opt_format(opt_arg(), OPT_FMT_ANY, &informat))
174 if (informat != FORMAT_ENGINE) {
175 in = bio_open_default(infile, 'r', informat);
181 if (informat == FORMAT_ASN1) {
186 } else if (informat == FORMAT_ENGINE) {
189 pkey = load_pubkey(infile, informat, 1, passin, e, "Public Key");
191 pkey = load_key(infile, informat, 1, passin, e, "Private Key");
/dports/security/cargo-audit/rustsec-cargo-audit-v0.15.2/cargo-audit/cargo-crates/openssl-src-111.14.0+1.1.1j/openssl/apps/
H A Dec.c79 int informat = FORMAT_PEM, outformat = FORMAT_PEM, text = 0, noout = 0; in ec_main() local
96 if (!opt_format(opt_arg(), OPT_FMT_ANY, &informat)) in ec_main()
170 if (informat != FORMAT_ENGINE) { in ec_main()
171 in = bio_open_default(infile, 'r', informat); in ec_main()
177 if (informat == FORMAT_ASN1) { in ec_main()
182 } else if (informat == FORMAT_ENGINE) { in ec_main()
185 pkey = load_pubkey(infile, informat, 1, passin, e, "Public Key"); in ec_main()
187 pkey = load_key(infile, informat, 1, passin, e, "Private Key"); in ec_main()

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