Searched refs:input_buff_SBAM_size (Results 1 – 2 of 2) sorted by relevance
149 int input_buff_SBAM_size; member
2560 pairer -> input_buff_SBAM_size = bin_buff_size_per_thread * 1024 * 1024; in SAM_pairer_create()2565 pairer -> input_buff_BIN_size = max(1024*1024, pairer -> input_buff_SBAM_size ); in SAM_pairer_create()2599 pairer -> threads[x1].input_buff_SBAM = malloc(pairer -> input_buff_SBAM_size); in SAM_pairer_create()2604 pairer -> threads[x1].orphant_table = HashTableCreate(pairer -> input_buff_SBAM_size / 100); in SAM_pairer_create()2764 if(pairer -> input_buff_SBAM_size - current_buffer_used < MIN_BAM_BLOCK_SIZE) { in SAM_pairer_fill_BIN_buff()2785 …current_buffer_used = SAM_pairer_read_SAM_MB(pairer -> input_fp , pairer -> input_buff_SBAM_size ,… in SAM_pairer_fill_BIN_buff()3749 pairer -> threads[x1].orphant_table = HashTableCreate(pairer -> input_buff_SBAM_size / 100); in SAM_pairer_reset()4595 if(thread_context -> orphant_space > pairer -> input_buff_SBAM_size) in SAM_pairer_thread_run()5673 pairer -> input_buff_SBAM_size *= 5; in pairer_increase_SAMBAM_buffer()5674 pairer -> input_buff_BIN_size = max(1024*1024, pairer -> input_buff_SBAM_size ); in pairer_increase_SAMBAM_buffer()[all …]