Searched refs:intervalStrings (Results 1 – 6 of 6) sorted by relevance
39 protected final List<String> intervalStrings; field in IntervalOverlapReadFilter49 this.intervalStrings = new ArrayList<>(); in IntervalOverlapReadFilter()57 public IntervalOverlapReadFilter(final List<String> intervalStrings) { in IntervalOverlapReadFilter() argument58 this.intervalStrings = new ArrayList<>(intervalStrings); in IntervalOverlapReadFilter()71 …final GenomeLocSortedSet intervals = IntervalUtils.loadIntervals(intervalStrings, IntervalSetRule.… in getDetector()
21 protected final List<String> intervalStrings = new ArrayList<>(); field in RequiredIntervalArgumentCollection25 return intervalStrings; in getIntervalStrings()31 intervalStrings.add(newInterval); in addToIntervalStrings()
21 protected final List<String> intervalStrings = new ArrayList<>(); field in OptionalIntervalArgumentCollection25 return intervalStrings; in getIntervalStrings()31 intervalStrings.add(newInterval); in addToIntervalStrings()
230 final List<String> intervalStrings, in loadIntervals() argument235 Utils.nonNull(intervalStrings); in loadIntervals()237 for ( final String intervalString : intervalStrings) { in loadIntervals()261 final List<String> intervalStrings, in loadIntervalsNonMerging() argument264 Utils.nonNull(intervalStrings); in loadIntervalsNonMerging()266 for ( final String intervalString : intervalStrings) { in loadIntervalsNonMerging()
220 final List<String> intervalStrings, in testSerialQueriesOnRemoteFile() argument236 for ( final String intervalString : intervalStrings ) { in testSerialQueriesOnRemoteFile()
168 …lusion( final File input, final String reference, final List<String> intervalStrings, final List<S… in testUnmappedReadInclusion() argument174 for ( final String intervalString : intervalStrings ) { in testUnmappedReadInclusion()