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/dports/biology/gatk/gatk-4.2.0.0/src/test/resources/org/broadinstitute/hellbender/tools/walkers/GenotypeGVCFs/
H A DNA12878.mergedIntervals.vcf15 …one_home=AWS gatk_key=null tag=NA read_filter=[] disable_read_filter=[] intervals=null excludeInte…
16 …intervals true --intervals 20:10000117-10000127 --intervals 20:10000137-10000147 --intervals 20:10…
17 …intervals true --only-output-calls-starting-in-intervals true --variant gendb:///var/folders/v5/gb…
/dports/biology/gatk/gatk-4.2.0.0/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/
H A DFILTER_test.vcf9 …intervals chr1:11869-14412 --intervals chr1:14363-29806 --intervals chr1:29554-31109 --intervals c…
/dports/math/jacop/jacop-4.8.0/src/main/java/org/jacop/floats/core/
H A DFloatIntervalDomain.java202 if (intervals == null || intervals.length < d.intervals.length) in addDom()
239 intervals[i].max)) || (min <= intervals[i].min && intervals[i].max <= max)) in unionAdapt()
257 intervals[t] = intervals[t - 1]; in unionAdapt()
316 intervals[++i] = intervals[target++]; in unionAdapt()
648 n += intervals[i].max - intervals[i].min; in getSizeFloat()
1718 intervals[i] = intervals[pointer]; in inMin()
2271 intervals[i] = intervals[i - 1];
2595 result.intervals[i] = intervals[i];
3190 intervals[i] = intervals[i + 1];
3216 intervals[i] = intervals[i - 1];
[all …]
/dports/net-mgmt/zabbix3-server/zabbix-3.0.32/frontends/php/include/classes/parsers/
H A DCItemDelayFlexParser.php84 private $intervals = []; variable in CItemDelayFlexParser
135 $this->intervals[$i] = [];
145 $this->intervals[$i] = [
214 $this->intervals[$i]['interval'] = 'h';
241 $this->intervals[$i]['interval'] .= '/';
2166 return $this->intervals;
2175 $intervals = [];
2177 foreach ($this->intervals as $interval) {
2179 $intervals[] = $interval['interval'];
2183 return $intervals;
[all …]
/dports/net-mgmt/zabbix3-java/zabbix-3.0.32/frontends/php/include/classes/parsers/
H A DCItemDelayFlexParser.php84 private $intervals = []; variable in CItemDelayFlexParser
135 $this->intervals[$i] = [];
145 $this->intervals[$i] = [
214 $this->intervals[$i]['interval'] = 'h';
241 $this->intervals[$i]['interval'] .= '/';
2166 return $this->intervals;
2175 $intervals = [];
2177 foreach ($this->intervals as $interval) {
2179 $intervals[] = $interval['interval'];
2183 return $intervals;
[all …]
/dports/net-mgmt/zabbix3-proxy/zabbix-3.0.32/frontends/php/include/classes/parsers/
H A DCItemDelayFlexParser.php84 private $intervals = []; variable in CItemDelayFlexParser
135 $this->intervals[$i] = [];
145 $this->intervals[$i] = [
214 $this->intervals[$i]['interval'] = 'h';
241 $this->intervals[$i]['interval'] .= '/';
2166 return $this->intervals;
2175 $intervals = [];
2177 foreach ($this->intervals as $interval) {
2179 $intervals[] = $interval['interval'];
2183 return $intervals;
[all …]
/dports/net-mgmt/zabbix3-frontend/zabbix-3.0.32/frontends/php/include/classes/parsers/
H A DCItemDelayFlexParser.php84 private $intervals = []; variable in CItemDelayFlexParser
135 $this->intervals[$i] = [];
145 $this->intervals[$i] = [
214 $this->intervals[$i]['interval'] = 'h';
241 $this->intervals[$i]['interval'] .= '/';
2166 return $this->intervals;
2175 $intervals = [];
2177 foreach ($this->intervals as $interval) {
2179 $intervals[] = $interval['interval'];
2183 return $intervals;
[all …]
/dports/net-mgmt/zabbix3-agent/zabbix-3.0.32/frontends/php/include/classes/parsers/
H A DCItemDelayFlexParser.php84 private $intervals = []; variable in CItemDelayFlexParser
135 $this->intervals[$i] = [];
145 $this->intervals[$i] = [
214 $this->intervals[$i]['interval'] = 'h';
241 $this->intervals[$i]['interval'] .= '/';
2166 return $this->intervals;
2175 $intervals = [];
2177 foreach ($this->intervals as $interval) {
2179 $intervals[] = $interval['interval'];
2183 return $intervals;
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/dports/sysutils/istio/istio-1.6.7/vendor/github.com/antlr/antlr4/runtime/Go/antlr/
H A Dinterval_set.go43 intervals []*Interval member
51 i.intervals = nil
76 i.intervals = append(i.intervals, v)
82 i.intervals = append(i.intervals[0:k], append([]*Interval{v}, i.intervals[k:]...)...)
96 i.intervals = append(i.intervals[0:k+1], i.intervals[k+2:]...)
99 i.intervals = append(i.intervals[0:k+1], i.intervals[k+2:]...)
106 i.intervals = append(i.intervals, v)
165 i.intervals = append(i.intervals[0:k], append([]*Interval{x}, i.intervals[k:]...)...)
169 i.intervals = append(i.intervals[0:k], i.intervals[k+1:]...)
190 i.intervals = append(i.intervals[0:k], i.intervals[k+1:]...)
[all …]
/dports/math/jacop/jacop-4.8.0/src/main/java/org/jacop/core/
H A DIntervalDomain.java186 if (intervals == null || intervals.length < d.intervals.length) in addDom()
274 … && min <= intervals[i].max + 1) || (min <= intervals[i].min && intervals[i].max <= max)) in unionAdapt()
292 intervals[t] = intervals[t - 1]; in unionAdapt()
351 intervals[++i] = intervals[target++]; in unionAdapt()
1434 intervals[position] = intervals[position + 1]; in removeInterval()
2716 intervals[i] = intervals[pointer]; in inMin()
3772 intervals[i] = intervals[i - 1];
4094 result.intervals[i] = intervals[i];
5066 intervals[i] = intervals[i + 1];
5092 intervals[i] = intervals[i - 1];
[all …]
/dports/biology/mapm3/mapm3-3.0_1/lib/
H A Dhistogrm.c26 int i, intervals; local
85 intervals=(int)(probab/.004);
88 intervals=(int)(probab/.004);
91 intervals=(int)(probab/.004);
94 intervals=(int)(probab/.004);
97 intervals=(int)(probab/.004);
100 intervals=(int)(probab/.004);
103 intervals=(int)(probab/.004);
106 intervals=(int)(probab/.004);
109 intervals=(int)(probab/.004);
[all …]
/dports/multimedia/qt5-multimedia/kde-qtmultimedia-5.15.2p3/src/multimedia/
H A Dqmediatimerange.cpp230 , intervals(other.intervals) in QMediaTimeRangePrivate()
239 intervals << interval; in QMediaTimeRangePrivate()
268 && intervals[i].e >= intervals[i + 1].s - 1) { in addInterval()
269 intervals[i].e = qMax(intervals[i].e, intervals[i + 1].e); in addInterval()
445 return d->intervals[d->intervals.count() - 1].e; in latestTime()
491 const auto intervals = range.intervals(); in addTimeRange() local
539 const auto intervals = range.intervals(); in removeTimeRange() local
590 d->intervals.clear(); in clear()
600 return d->intervals; in intervals()
651 return a.intervals() == b.intervals(); in operator ==()
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/dports/devel/py-antlr4-python3-runtime/antlr4-python3-runtime-4.9/src/antlr4/
H A DIntervalSet.py16 self.intervals = None
20 if self.intervals is not None:
21 for i in self.intervals:
38 if self.intervals is None:
39 self.intervals = list()
40 self.intervals.append(v)
44 for i in self.intervals:
70 if k<len(self.intervals)-1:
71 l = self.intervals[k]
84 for i in self.intervals:
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/dports/www/grafana8/grafana-8.3.6/pkg/tsdb/elasticsearch/client/
H A Dindex_pattern_test.go112 require.Len(t, intervals, 1)
120 require.Len(t, intervals, 2)
129 require.Len(t, intervals, 10)
141 require.Len(t, intervals, 1)
149 require.Len(t, intervals, 2)
170 require.Len(t, intervals, 1)
178 require.Len(t, intervals, 1)
186 require.Len(t, intervals, 2)
195 require.Len(t, intervals, 2)
204 require.Len(t, intervals, 3)
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/dports/java/jflex/jflex-1.8.1/src/main/java/jflex/core/unicode/
H A DIntCharSet.java54 for (Interval i : intervals) { in of()
157 int size = intervals.size(); in add()
197 intervals.remove(i); in add()
216 int size = intervals.size(); in add()
252 intervals.remove(i + 1); in add()
298 return Objects.equals(intervals, set.intervals); in equals()
408 intervals.remove(i); in sub()
473 return intervals.size(); in numIntervals()
482 return intervals; in getIntervals()
567 if (intervals.get(j).end >= intervals.get(j + 1).start) { in invariants()
[all …]
/dports/databases/pg_citus/citus-10.2.3/src/test/regress/expected/
H A Dsingle_hash_repartition_join.out44 DEBUG: join prunable for intervals [-1073741824,-1] and [0,1073741823]
47 DEBUG: join prunable for intervals [0,1073741823] and [-1073741824,-1]
75 DEBUG: join prunable for intervals [-1073741824,-1] and [0,1073741823]
78 DEBUG: join prunable for intervals [0,1073741823] and [-1073741824,-1]
106 DEBUG: join prunable for intervals [-1073741824,-1] and [0,1073741823]
109 DEBUG: join prunable for intervals [0,1073741823] and [-1073741824,-1]
137 DEBUG: join prunable for intervals [-1073741824,-1] and [0,1073741823]
140 DEBUG: join prunable for intervals [0,1073741823] and [-1073741824,-1]
149 DEBUG: join prunable for intervals [-1073741824,-1] and [0,1073741823]
152 DEBUG: join prunable for intervals [0,1073741823] and [-1073741824,-1]
[all …]
/dports/databases/mongodb36/mongodb-src-r3.6.23/src/mongo/s/
H A Dchunk_manager_index_bounds_test.cpp87 ASSERT_EQUALS(oil.intervals.size(), expectedOil.intervals.size()); in checkIndexBoundsWithKey()
90 oil.intervals[i].compare(expectedOil.intervals[i])) { in checkIndexBoundsWithKey()
91 log() << oil.intervals[i] << " != " << expectedOil.intervals[i]; in checkIndexBoundsWithKey()
94 oil.intervals[i].compare(expectedOil.intervals[i])); in checkIndexBoundsWithKey()
110 if (oil.intervals.size() != expectedOil.intervals.size()) { in checkIndexBounds()
112 log() << oil.intervals[i]; in checkIndexBounds()
116 ASSERT_EQUALS(oil.intervals.size(), expectedOil.intervals.size()); in checkIndexBounds()
119 oil.intervals[i].compare(expectedOil.intervals[i])); in checkIndexBounds()
295 ASSERT_EQUALS(oil.intervals.size(), 1U); in TEST_F()
310 expected.intervals.push_back(interval); in TEST_F()
[all …]
/dports/sysutils/istio/istio-1.6.7/vendor/github.com/antlr/antlr4/runtime/Swift/Sources/Antlr4/misc/
H A DIntervalSet.swift44 self.intervals = intervals
56 intervals = [Interval]()
76 intervals.removeAll() in clear()
117 let r = intervals[i] in add()
251 while resultI < result.intervals.count && rightI < right.intervals.count { in subtract()
448 let last = intervals[intervals.count - 1] in getMaxElement()
463 return intervals[0].a in getMinElement()
470 return intervals in getIntervals()
513 if intervals.isEmpty { in toString()
560 if intervals.isEmpty { in toString()
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/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/spark/sv/utils/
H A DSVIntervalTreeTest.java10 private static SVInterval[] intervals = { field in SVIntervalTreeTest
36 tree.put(intervals[idx], idx); in initTree()
79 testTree.remove(intervals[deletedIdx]); in removeTest()
128 Assert.assertEquals(testTree.min(intervals[idx]).getInterval(), intervals[idx]); in minTest() local
143 Assert.assertEquals(testTree.minOverlapper(intervals[0]).getInterval(), intervals[0]); in minOverlapperTest() local
144 final int lastIdx = intervals.length - 1; in minOverlapperTest()
146 … Assert.assertEquals(testTree.minOverlapper(intervals[idx]).getInterval(), intervals[idx-1]); in minOverlapperTest() local
148 … Assert.assertEquals(testTree.minOverlapper(intervals[lastIdx]).getInterval(), intervals[lastIdx]); in minOverlapperTest() local
163 final int lastIdx = intervals.length - 1; in maxTest()
167 Assert.assertEquals(testTree.max(intervals[idx]).getInterval(), intervals[idx]); in maxTest() local
[all …]
/dports/sysutils/istio/istio-1.6.7/vendor/github.com/antlr/antlr4/runtime/Python3/src/antlr4/
H A DIntervalSet.py17 self.intervals = None
21 if self.intervals is not None:
22 for i in self.intervals:
39 if self.intervals is None:
40 self.intervals = list()
41 self.intervals.append(v)
45 for i in self.intervals:
71 if k<len(self.intervals)-1:
72 l = self.intervals[k]
85 for i in self.intervals:
[all …]
/dports/sysutils/istio/istio-1.6.7/vendor/github.com/antlr/antlr4/runtime/Python2/src/antlr4/
H A DIntervalSet.py31 self.intervals = None
36 for i in self.intervals:
53 if self.intervals is None:
54 self.intervals = list()
55 self.intervals.append(v)
59 for i in self.intervals:
85 if k<len(self.intervals)-1:
86 l = self.intervals[k]
87 r = self.intervals[k+1]
99 for i in self.intervals:
[all …]
/dports/biology/seqan1/seqan-1.3.1/demos/
H A Dinterval_tree.cpp16 String<TInterval> intervals; in main() local
17 resize(intervals,5); in main()
20 intervals[0].i1 = 5; intervals[0].i2 = 1000; in main()
21 intervals[0].cargo = "gene"; in main()
23 intervals[1].i1 = 50; intervals[1].i2 = 200; in main()
24 intervals[1].cargo = "exon"; in main()
26 intervals[2].i1 = 600; intervals[2].i2 = 800; in main()
27 intervals[2].cargo = "exon"; in main()
29 intervals[3].i1 = 100; intervals[3].i2 = 200; in main()
32 intervals[4].i1 = 600; intervals[4].i2 = 700; in main()
[all …]
/dports/sysutils/istio/istio-1.6.7/vendor/github.com/antlr/antlr4/runtime/CSharp/runtime/CSharp/Antlr4.Runtime/Misc/
H A DIntervalSet.cs48 this.intervals = intervals; in IntervalSet()
98 intervals.Clear(); in Clear()
186 intervals.Add(addition); in Add()
295 while (resultI < result.intervals.Count && rightI < right.intervals.Count) in Subtract()
506 return intervals == null || intervals.Count == 0;
518 if (intervals != null && intervals.Count == 1)
546 Interval last = intervals[intervals.Count - 1];
575 return intervals; in GetIntervals()
608 return this.intervals.SequenceEqual(other.intervals); in Equals()
619 if (this.intervals == null || this.intervals.Count == 0) in ToString()
[all …]
/dports/graphics/py-pointpats/pointpats-2.2.0/pointpats/
H A D_deprecated_distance_statistics.py481 F = _f(pp, n, intervals=intervals, dmin=dmin, dmax=dmax, d=d)
482 G = _g(pp, intervals=intervals, dmin=dmin, dmax=dmax, d=d)
742 self.intervals = intervals
822 intervals=10, argument
831 self.intervals = intervals
843 intervals=self.intervals,
916 intervals=10, argument
925 self.intervals = intervals
937 intervals=self.intervals,
1008 self.intervals = intervals
[all …]
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/demos/tutorial/simple_rna_seq/
H A Dinterval_tree.cpp16 String<TInterval> intervals; in main() local
17 resize(intervals, 5); in main()
20 intervals[0].i1 = 5; intervals[0].i2 = 1000; in main()
21 intervals[0].cargo = "gene"; in main()
23 intervals[1].i1 = 50; intervals[1].i2 = 200; in main()
24 intervals[1].cargo = "exon"; in main()
26 intervals[2].i1 = 600; intervals[2].i2 = 800; in main()
27 intervals[2].cargo = "exon"; in main()
29 intervals[3].i1 = 100; intervals[3].i2 = 200; in main()
30 intervals[3].cargo = "coding"; in main()
[all …]

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