Searched refs:invarfrac (Results 1 – 3 of 3) sorted by relevance
106 invarfrac = 0.0; in getoptions()1047 <= (1.0 - invarfrac))) { in makev()1089 tt = ((1.0 - (double)num1 / denominator)-invarfrac)/(1.0-invarfrac); in makev()1109 q1 = q1 * (1.0-invarfrac) + invarfrac; in makev()1110 q2 *= (1.0 - invarfrac); in makev()1111 q3 *= (1.0 - invarfrac); in makev()1121 slope *= (1.0-invarfrac); in makev()1193 slope += (1.0-invarfrac) * weightrat[i] * ( in makev()1198 (aa * ((1.0-invarfrac)*tbl[idx - 1].z1zz + invarfrac) in makev()1199 + bb * (1.0-invarfrac)*tbl[idx - 1].z1yy in makev()[all …]
150 invarfrac = 0.0; in prot_getoptions()1367 elambdat = exp(-cvi*log(1.0-rate[cat-1]*tt*(eig[m]/(1.0-invarfrac))/cvi)); in predict()1375 dp += (rate[cat-1]*eig[m]/(1.0-rate[cat-1]*tt*(eig[m]/(1.0-invarfrac))/cvi)) * q; in predict()1385 p *= (1.0 - invarfrac); in predict()1386 p += invarfrac; in predict()1388 dp *= (1.0 - invarfrac); in predict()1389 d2p *= (1.0 - invarfrac); in predict()
23 freqar, freqcy, freqgr, freqty, cvi, invarfrac, sumrates, fracchange;