Searched refs:isAtoms (Results 1 – 6 of 6) sorted by relevance
129 private boolean isAtoms; field in PointGroup223 pg.isAtoms = (bsAtoms != null); in getPointGroup()224 pg.bsAtoms = (pg.isAtoms ? bsAtoms : BSUtil.newBitSet2(0, atomset.length)); in getPointGroup()439 if (isAtoms && ac > ATOM_COUNT_MAX) in getPointsAndElements()487 if (isAtoms && r2 < distanceTolerance2) in getPointsAndElements()
549 void colorVertices(short colix, BS bs, boolean isAtoms) { in colorVertices() argument553 BS bsVertices = (isAtoms ? new BS() : bs); in colorVertices()556 if (isAtoms) in colorVertices()570 if (!isAtoms) { in colorVertices()
1567 boolean isAtoms = haveIndex || !(tokenValue instanceof BondSet) in getBitsetProperty()1579 tok = (isAtoms ? T.atoms : T.bonds); in getBitsetProperty()1616 P3 pt = (isPt || !isAtoms ? new P3() : null); in getBitsetProperty()1634 bsNew = (tok == T.atoms ? (isAtoms ? bs : vwr.ms.getAtoms(T.bonds, bs)) in getBitsetProperty()1635 : (isAtoms ? (BS) BondSet.newBS(vwr.getBondsForSelectedAtoms(bs), null) in getBitsetProperty()1713 if (isAtoms) { in getBitsetProperty()
1832 boolean isAtoms = (op.intValue != T.bonds); in getPointOrBitsetOperation()1833 if (!isAtoms && x2.value instanceof BondSet) in getPointOrBitsetOperation()1836 if (isAtoms && bs.cardinality() == 1 && (op.intValue & T.minmaxmask) == 0) in getPointOrBitsetOperation()1840 return (isAtoms ? addXObj(val) : addX(SV.newV(T.bitset, BondSet.newBS( in getPointOrBitsetOperation()
266 boolean isAtoms = !(tokenValue instanceof BondSet); in getBitsetIdentFull()267 if (isAtoms) { in getBitsetIdentFull()275 if (bs == null || chk || isAtoms && pt < 0) { in getBitsetIdentFull()283 int[] indices = (isAtoms || !useAtomMap ? null : ((BondSet) tokenValue) in getBitsetIdentFull()289 Map<String, Object> htValues = (isAtoms || asIdentity ? null : LabelToken in getBitsetIdentFull()291 LabelToken[] tokens = (asIdentity ? null : isAtoms ? labeler.compile( in getBitsetIdentFull()302 if (isAtoms) { in getBitsetIdentFull()1209 boolean isAtoms = (!isQuaternion && strSmiles == null && !isPolyhedral in compare()1211 if (isAtoms) in compare()1218 bsAtoms1 = (isAtoms ? vwr.getAtomBitSet("spine") : new BS()); in compare()[all …]
1484 boolean isAtoms = (x1.tok == T.bitset); in evaluateFind()1521 boolean isInchi = isAtoms && !isList && sFind.equalsIgnoreCase("INCHI"); in evaluateFind()1522 boolean isInchiKey = isAtoms && !isList in evaluateFind()1533 BS bsAtoms = (isAtoms ? (BS) x1.value : null); in evaluateFind()1542 if (isSmiles || isSMARTS || isAtoms) { in evaluateFind()