Searched refs:is_BAM_output (Results 1 – 5 of 5) sorted by relevance
824 …if((global_context -> config.is_BAM_output == 0 || global_context->config.output_prefix[0]==0) && …825 …if(global_context -> config.is_BAM_output==0)SUBREADputs("ERROR: SAM output doesn't support read s…1886 …if( global_context -> config.is_BAM_output && !global_context -> config.is_input_read_order_requi…1897 if(global_context -> config.is_BAM_output){2183 if(global_context -> config.is_BAM_output){3785 … print_in_box(80, 0, 0, "Output method : STDOUT (%s)" , context->config.is_BAM_output?"BAM":"SAM");3872 if(context -> config.is_BAM_output)4071 …if(context->config.space_type == GENE_SPACE_COLOR && context->config.is_BAM_output && !context->co…4155 print_in_box(80,0,0,"Create the output %s file.", context -> config.is_BAM_output?"BAM":"SAM");4156 if(context -> config.is_BAM_output)[all …]
178 int is_BAM_output; member
525 global_context->config.is_BAM_output = 0; in parse_opts_aligner()
524 global_context->config.is_BAM_output = 0; in parse_opts_subjunc()
4455 context->config.is_BAM_output = 1; in init_global_context()