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Searched refs:is_reversed (Results 1 – 25 of 165) sorted by relevance

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/dports/biology/spoa/spoa-4.0.7/src/
H A Dmain.cpp124 const std::vector<bool>& is_reversed, in PrintGfa() argument
130 if (!is_reversed.empty() && is_reversed.size() < graph.sequences().size()) { in PrintGfa()
178 bool ir = !is_reversed.empty() && is_reversed[i]; in PrintGfa()
276 std::vector<bool> is_reversed; in main() local
299 is_reversed.push_back(false); in main()
302 is_reversed.push_back(true); in main()
343 PrintGfa(graph, headers, is_reversed, it == 4); in main()
/dports/biology/subread/subread-2.0.2-source/src/longread-one/
H A DLRMsorted-hashtable.h31 …hash_t * the_table, LRMgehash_key_t key, int offset, int read_len, int is_reversed, LRMgene_vote_t…
32 …hash_t * the_table, LRMgehash_key_t key, int offset, int read_len, int is_reversed, LRMgene_vote_t…
44 …hash_t * the_table, LRMgehash_key_t key, int offset, int read_len, int is_reversed, LRMgene_vote_t…
H A DLRMsorted-hashtable.c53 …_t * the_table, LRMgehash_key_t raw_key, int offset, int read_len, int is_reversed, LRMgene_vote_t… in LRMgehash_go_q() argument
131 if(is_reversed == (0!=(vote -> masks[offsetX][i]&LRMIS_NEGATIVE_STRAND))) in LRMgehash_go_q()
177 vote -> masks[offsetX2][datalen2]=(is_reversed?LRMIS_NEGATIVE_STRAND:0); in LRMgehash_go_q()
441 …_t * the_table, LRMgehash_key_t raw_key, int offset, int read_len, int is_reversed, LRMgene_vote_t… in LRMgehash_go_QQ() argument
492 …if( kv == di && is_reversed == (0!=(vote -> masks[offsetX][i]&LRMIS_NEGATIVE_STRAND)) && offset … in LRMgehash_go_QQ()
507 vote -> masks[offsetX][datalen]=(is_reversed?LRMIS_NEGATIVE_STRAND:0); in LRMgehash_go_QQ()
518 …hash_t * the_table, LRMgehash_key_t key, int offset, int read_len, int is_reversed, LRMgene_vote_t… in LRMgehash_go_tolerance() argument
522 …ret+=LRMgehash_go_q(the_table, key, offset, read_len, is_reversed, vote, indel_tolerance, subread_… in LRMgehash_go_tolerance()
558 …int dret=LRMgehash_go_q(the_table, mutation_key, offset, read_len, is_reversed, vote, indel_toler… in LRMgehash_go_tolerance()
H A Dlongread-mapping.c517 …for(iteration_context->is_reversed = 0; iteration_context->is_reversed<2; iteration_context->is_re…
519 …if(0 == iteration_context->is_reversed) LRMreverse_read_and_qual(context, thread_context, iteratio…
521 iteration_context->is_reversed=1;
666 int ii, max_window_no = LRMMAX_SORTED_WINDOW_NO_HARD_LIMIT, is_reversed; local
677 for(is_reversed = 0; is_reversed < 2; is_reversed++){
685 if( iteration_context -> sorting_is_negative_strand[ii] != is_reversed )
694 …while(iteration_context -> sorting_is_negative_strand[win_start_ii] != is_reversed) win_start_ii +…
700 while(iteration_context -> sorting_is_negative_strand[win_start_ii] != is_reversed){
720 if( is_reversed == iteration_context -> sorted_window_is_negative_strand[tt] &&
1075 …if(iteration_context -> is_reversed != iteration_context -> sorted_window_is_negative_strand[windo…
[all …]
/dports/biology/subread/subread-2.0.2-source/src/
H A Dsorted-hashtable.h61 …(gehash_t * the_table, gehash_key_t key, int offset, int read_len, int is_reversed, gene_vote_t * …
63 …(gehash_t * the_table, gehash_key_t key, int offset, int read_len, int is_reversed, gene_vote_t * …
65 …(gehash_t * the_table, gehash_key_t key, int offset, int read_len, int is_reversed, gene_vote_t * …
66 …(gehash_t * the_table, gehash_key_t key, int offset, int read_len, int is_reversed, gene_vote_t * …
/dports/editors/helix/helix-0.5.0/cargo-crates/ropey-1.3.1/src/
H A Diter.rs88 is_reversed: bool, field
106 is_reversed: false, in new()
192 self.is_reversed = !self.is_reversed; in reverse()
200 if !self.is_reversed { in prev()
295 is_reversed: bool, field
403 self.is_reversed = !self.is_reversed; in reverse()
519 is_reversed: bool, field
615 self.is_reversed = !self.is_reversed; in reverse()
811 is_reversed, in size_hint()
871 is_reversed: bool, field
[all …]
/dports/editors/kak-lsp/kak-lsp-11.1.0/cargo-crates/ropey-1.3.1/src/
H A Diter.rs88 is_reversed: bool, field
106 is_reversed: false, in new()
192 self.is_reversed = !self.is_reversed; in reverse()
200 if !self.is_reversed { in prev()
295 is_reversed: bool, field
403 self.is_reversed = !self.is_reversed; in reverse()
519 is_reversed: bool, field
615 self.is_reversed = !self.is_reversed; in reverse()
811 is_reversed, in size_hint()
871 is_reversed: bool, field
[all …]
/dports/biology/infernal/infernal-1.1.3/src/impl_sse/
H A Dsse_cmsearch.c92 int do_reverse, is_reversed; in main() local
317 is_reversed = 0; in main()
327 fprintf(stderr,"Stage 1: %-24s %-22s",seq->name,is_reversed?"(reverse complement)":""); in main()
354 if (!is_reversed) in main()
362 if (!is_reversed) in main()
381 if (!is_reversed) in main()
387 if (!is_reversed) in main()
410 if (!is_reversed) in main()
418 if (!is_reversed) in main()
431 if (do_reverse && !is_reversed) { in main()
[all …]
/dports/sysutils/gnome-control-center/gnome-control-center-41.2/panels/keyboard/
H A Dkeyboard-shortcuts.c68 gboolean is_reversed, hidden; in parse_start_tag() local
153 is_reversed = FALSE; in parse_start_tag()
178 is_reversed = TRUE; in parse_start_tag()
207 key.is_reversed = is_reversed; in parse_start_tag()
H A Dcc-keyboard-item.c38 gboolean is_reversed; member
608 gboolean is_reversed) in cc_keyboard_item_add_reverse_item() argument
616 reverse_item->is_reversed = !is_reversed; in cc_keyboard_item_add_reverse_item()
619 g_warn_if_fail (reverse_item->is_reversed == !!is_reversed); in cc_keyboard_item_add_reverse_item()
621 item->is_reversed = !!is_reversed; in cc_keyboard_item_add_reverse_item()
/dports/x11/mlterm/mlterm-3.9.1/uitoolkit/
H A Dui_color_manager.c192 if (color_man->is_reversed) { in ui_get_xcolor()
275 if (color_man->is_reversed) { in ui_color_manager_reverse_video()
279 color_man->is_reversed = 1; in ui_color_manager_reverse_video()
285 if (!color_man->is_reversed) { in ui_color_manager_restore_video()
289 color_man->is_reversed = 0; in ui_color_manager_restore_video()
H A Dui_selection.c212 sel->is_reversed = 1; in ui_start_selection()
307 if (!sel->is_reversed) { in ui_restore_selected_region_color_except_logs()
332 if (!sel->is_reversed) { in ui_reverse_selected_region_color_except_logs()
354 if (!sel->is_reversed) { in ui_restore_selected_region_color()
366 sel->is_reversed = 0; in ui_restore_selected_region_color()
376 if (sel->is_reversed) {
388 sel->is_reversed = 1;
H A Dui_selection.h52 int8_t is_reversed; member
85 #define ui_sel_is_reversed(sel) ((sel)->is_reversed)
/dports/biology/wise/wise2.4.1/src/dynlibsrc/
H A Dhscore.xs299 set_is_reversed(obj,is_reversed)
301 boolean is_reversed
303 RETVAL = Wise2_replace_is_reversed_DataEntry(obj,is_reversed);
310 is_reversed(obj)
H A Dhscore.pod405 =item is_reversed
495 &Wise2::DataEntry::set_is_reversed(obj,is_reversed)
497 Replace member variable is_reversed
503 Argument is_reversed [OWNER] New value of the variable [boolean]
504 Return [SOFT ] member variable is_reversed [boolean]
507 =item is_reversed
509 &Wise2::DataEntry::is_reversed(obj)
511 Access member variable is_reversed
517 Return [SOFT ] member variable is_reversed [boolean]
/dports/www/firefox-esr/firefox-91.8.0/gfx/skia/skia/src/pdf/
H A DSkClusterator.cpp14 static bool is_reversed(const uint32_t* clusters, uint32_t count) { in is_reversed() function
33 , fReversedChars(fClusters ? is_reversed(fClusters, fGlyphCount) : false) in SkClusterator()
/dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/skia/src/pdf/
H A DSkClusterator.cpp14 static bool is_reversed(const uint32_t* clusters, uint32_t count) { in is_reversed() function
33 , fReversedChars(fClusters ? is_reversed(fClusters, fGlyphCount) : false) in SkClusterator()
/dports/www/qt5-webengine/qtwebengine-everywhere-src-5.15.2/src/3rdparty/chromium/third_party/skia/src/pdf/
H A DSkClusterator.cpp14 static bool is_reversed(const uint32_t* clusters, uint32_t count) { in is_reversed() function
33 , fReversedChars(fClusters ? is_reversed(fClusters, fGlyphCount) : false) in SkClusterator()
/dports/www/firefox/firefox-99.0/gfx/skia/skia/src/pdf/
H A DSkClusterator.cpp14 static bool is_reversed(const uint32_t* clusters, uint32_t count) { in is_reversed() function
33 , fReversedChars(fClusters ? is_reversed(fClusters, fGlyphCount) : false) in SkClusterator()
/dports/mail/thunderbird/thunderbird-91.8.0/gfx/skia/skia/src/pdf/
H A DSkClusterator.cpp14 static bool is_reversed(const uint32_t* clusters, uint32_t count) { in is_reversed() function
33 , fReversedChars(fClusters ? is_reversed(fClusters, fGlyphCount) : false) in SkClusterator()
/dports/lang/spidermonkey78/firefox-78.9.0/gfx/skia/skia/src/pdf/
H A DSkClusterator.cpp14 static bool is_reversed(const uint32_t* clusters, uint32_t count) { in is_reversed() function
33 , fReversedChars(fClusters ? is_reversed(fClusters, fGlyphCount) : false) in SkClusterator()
/dports/www/qt5-webengine/qtwebengine-everywhere-src-5.15.2/src/3rdparty/chromium/third_party/blink/renderer/core/html/
H A Dlist_item_ordinal.h96 static NodeAndOrdinal NextOrdinalItem(bool is_reversed,
104 static void InvalidateOrdinalsAfter(bool is_reversed,
/dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/blink/renderer/core/html/
H A Dlist_item_ordinal.h74 static NodeAndOrdinal NextOrdinalItem(bool is_reversed,
82 static void InvalidateOrdinalsAfter(bool is_reversed,
/dports/biology/wise/wise2.4.1/src/models/
H A Dalignwise.c17 int is_reversed; in show_Gene_debug() local
22 is_reversed = 1; in show_Gene_debug()
24 is_reversed = 0; in show_Gene_debug()
28 if( is_reversed == 0 ) { in show_Gene_debug()
/dports/math/p5-Math-String/Math-String-1.30/t/
H A Dsequence.t47 ok ($seq->is_reversed(),0);
50 ok ($seq->is_reversed(),1);

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