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Searched refs:jbaseToNumber (Results 1 – 2 of 2) sorted by relevance

/dports/biology/bbmap/bbmap/jni/
H A DBandedAlignerJNI.c608 jbyte * jbaseToNumber = (jbyte*)(*env)->GetPrimitiveArrayCritical(env, baseToNumber, NULL); in Java_align2_BandedAlignerJNI_alignForwardJNI() local
622 lastQueryLoc, lastRefLoc, lastRow, lastEdits, lastOffset, maxWidth, jbaseToNumber); in Java_align2_BandedAlignerJNI_alignForwardJNI()
625 (*env)->ReleasePrimitiveArrayCritical(env, baseToNumber, jbaseToNumber, JNI_ABORT); in Java_align2_BandedAlignerJNI_alignForwardJNI()
653 jbyte * jbaseToNumber = (jbyte*)(*env)->GetPrimitiveArrayCritical(env, baseToNumber, NULL); in Java_align2_BandedAlignerJNI_alignForwardRCJNI() local
665 …lastQueryLoc, lastRefLoc, lastRow, lastEdits, lastOffset, maxWidth, jbaseToNumber, jbaseToCompleme… in Java_align2_BandedAlignerJNI_alignForwardRCJNI()
668 (*env)->ReleasePrimitiveArrayCritical(env, baseToNumber, jbaseToNumber, JNI_ABORT); in Java_align2_BandedAlignerJNI_alignForwardRCJNI()
694 jbyte * jbaseToNumber = (jbyte*)(*env)->GetPrimitiveArrayCritical(env, baseToNumber, NULL); in Java_align2_BandedAlignerJNI_alignReverseJNI() local
706 lastQueryLoc, lastRefLoc, lastRow, lastEdits, lastOffset, maxWidth, jbaseToNumber); in Java_align2_BandedAlignerJNI_alignReverseJNI()
708 (*env)->ReleasePrimitiveArrayCritical(env, baseToNumber, jbaseToNumber, JNI_ABORT); in Java_align2_BandedAlignerJNI_alignReverseJNI()
736 jbyte * jbaseToNumber = (jbyte*)(*env)->GetPrimitiveArrayCritical(env, baseToNumber, NULL); in Java_align2_BandedAlignerJNI_alignReverseRCJNI() local
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H A DMultiStateAligner11tsJNI.c789 jbyte * jbaseToNumber=(jbyte*)(*env)->GetPrimitiveArrayCritical(env, baseToNumber, NULL); in Java_align2_MultiStateAligner11tsJNI_fillLimitedXJNI() local
796 …AY,maxRows,maxColumns,bandwidth,bandwidthRatio,jvertLimit,jhorizLimit,jbaseToNumber,jPOINTSoff_INS… in Java_align2_MultiStateAligner11tsJNI_fillLimitedXJNI()
808 (*env)->ReleasePrimitiveArrayCritical(env, baseToNumber, jbaseToNumber, JNI_ABORT); in Java_align2_MultiStateAligner11tsJNI_fillLimitedXJNI()