Searched refs:jmlast (Results 1 – 3 of 3) sorted by relevance
3284 int jmlast=0; //index of first intron match in reference in getOvlCode() local3321 jmlast=j; in getOvlCode()3333 if (jmfirst==1 && jmlast==jmax) {//identical intron chains in getOvlCode()3343 if (jmlast<jmax && m.end > r.exons[jmlast]->end) in getOvlCode()3344 r_iovh = m.end - r.exons[jmlast]->end; in getOvlCode()3346 } else if ((jmfirst==1 && jmlast==jmax)) {//ref full intron chain match in getOvlCode()
3284 int jmlast=0; //index of exon after last intron match in reference in getOvlCode() local3330 jmlast=j; in getOvlCode()3373 if (jmfirst==1 && jmlast==jmax) {//identical intron chains in getOvlCode()3390 if (jmlast<jmax) { in getOvlCode()3391 for (int j=jmlast;j<jmax;++j) in getOvlCode()3402 } else if ((jmfirst==1 && jmlast==jmax)) {//ref intron chain match in getOvlCode()
3339 int jmlast=0; //index of exon after last intron match in reference in getOvlData() local3396 jmlast=j; in getOvlData()3418 if (jmfirst==1 && jmlast==jmax) {//identical intron chains in getOvlData()3439 if (jmlast<jmax) { in getOvlData()3440 for (int j=jmlast;j<jmax;++j) in getOvlData()3454 } else if ((jmfirst==1 && jmlast==jmax)) {//ref intron chain match in getOvlData()