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Searched refs:kOpts (Results 1 – 25 of 25) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/api/
H A Dqueryinfo_unit_test.cpp63 const CBlastOptions& kOpts = opts->GetOptions(); in BOOST_AUTO_TEST_CASE() local
64 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
65 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
88 const CBlastOptions& kOpts = opts->GetOptions(); in BOOST_AUTO_TEST_CASE() local
89 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
90 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
112 const CBlastOptions& kOpts = opts->GetOptions(); in BOOST_AUTO_TEST_CASE() local
113 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
114 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
136 const CBlastOptions& kOpts = opts->GetOptions(); in BOOST_AUTO_TEST_CASE() local
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H A Dscoreblk_unit_test.cpp75 const CBlastOptions& kOpts = opts->GetOptions(); in BOOST_AUTO_TEST_CASE() local
76 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
77 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
120 const CBlastOptions& kOpts = opts->GetOptions(); in BOOST_AUTO_TEST_CASE() local
121 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
122 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
173 const CBlastOptions& kOpts = opts->GetOptions(); in BOOST_AUTO_TEST_CASE() local
174 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
175 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
248 const CBlastOptions& kOpts = opts->GetOptions(); in BOOST_AUTO_TEST_CASE() local
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H A Dblastoptions_unit_test.cpp347 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
348 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
516 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
517 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
604 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
605 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
875 const CBlastOptions& kOpts = opts->GetOptions(); in BOOST_AUTO_TEST_CASE() local
876 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
877 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
952 const CBlastOptions& kOpts = opts->GetOptions(); in BOOST_AUTO_TEST_CASE() local
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H A Dblastextend_unit_test.cpp271 const CBlastOptions& kOpts = opts_handle.GetOptions(); in BOOST_FIXTURE_TEST_SUITE() local
272 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_FIXTURE_TEST_SUITE()
273 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_FIXTURE_TEST_SUITE()
358 const CBlastOptions& kOpts = opts_handle.GetOptions(); in BOOST_AUTO_TEST_CASE() local
359 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
360 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
471 const CBlastOptions& kOpts = opts_handle.GetOptions(); in BOOST_AUTO_TEST_CASE() local
472 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
473 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
H A Dtraceback_unit_test.cpp224 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
225 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
359 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
360 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
492 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
493 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
619 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
620 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
862 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
863 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
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H A Dblastsetup_unit_test.cpp886 const CBlastOptions& kOpts = opts->GetOptions(); in BOOST_AUTO_TEST_CASE() local
887 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
888 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
1206 const CBlastOptions& kOpts = opts_handle->GetOptions(); in BOOST_AUTO_TEST_CASE() local
1213 kOpts.GetProgramType(), in BOOST_AUTO_TEST_CASE()
1334 const CBlastOptions& kOpts = opts->GetOptions(); in BOOST_AUTO_TEST_CASE() local
1335 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
1336 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
1373 const CBlastOptions& kOpts = opts->GetOptions(); in BOOST_AUTO_TEST_CASE() local
1374 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
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H A Drmblast_traceback_unit_test.cpp214 const CBlastOptions& kOpts = blaster.GetOptionsHandle().GetOptions(); in BOOST_FIXTURE_TEST_SUITE() local
215 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_FIXTURE_TEST_SUITE()
216 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_FIXTURE_TEST_SUITE()
H A Doptionshandle_unit_test.cpp265 const CBlastOptions& kOpts = opts->GetOptions(); in BOOST_AUTO_TEST_CASE() local
266 BOOST_REQUIRE_EQUAL(eAaLookupTable, kOpts.GetLookupTableType()); in BOOST_AUTO_TEST_CASE()
268 BOOST_REQUIRE_EQUAL(eCompressedAaLookupTable, kOpts.GetLookupTableType()); in BOOST_AUTO_TEST_CASE()
270 BOOST_REQUIRE_EQUAL(eAaLookupTable, kOpts.GetLookupTableType()); in BOOST_AUTO_TEST_CASE()
H A Dredoalignment_unit_test.cpp244 const CBlastOptions& kOpts = blaster.GetOptionsHandle().GetOptions(); in runRedoAlignmentCoreUnitTest() local
245 EBlastProgramType core_prog = kOpts.GetProgramType(); in runRedoAlignmentCoreUnitTest()
246 ENa_strand strand_opt = kOpts.GetStrandOption(); in runRedoAlignmentCoreUnitTest()
H A Dblastfilter_unit_test.cpp449 const CBlastOptions& kOpts, in setupQueryStructures() argument
455 EBlastProgramType prog = kOpts.GetProgramType(); in setupQueryStructures()
456 ENa_strand strand_opt = kOpts.GetStrandOption(); in setupQueryStructures()
1579 const CBlastOptions& kOpts = opts->GetOptions(); in setupQueryInfoForOffsetTranslation() local
1580 EBlastProgramType prog = kOpts.GetProgramType(); in setupQueryInfoForOffsetTranslation()
1581 ENa_strand strand_opt = kOpts.GetStrandOption(); in setupQueryInfoForOffsetTranslation()
H A Dsplit_query_unit_test.cpp214 const CBlastOptions& kOpts = opts->GetOptions(); in x_PrepareBlastQueryStructures() local
215 EBlastProgramType prog = kOpts.GetProgramType(); in x_PrepareBlastQueryStructures()
217 ? *strand : kOpts.GetStrandOption(); in x_PrepareBlastQueryStructures()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/api/
H A Dqueryinfo_unit_test.cpp63 const CBlastOptions& kOpts = opts->GetOptions(); in BOOST_AUTO_TEST_CASE() local
64 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
65 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
88 const CBlastOptions& kOpts = opts->GetOptions(); in BOOST_AUTO_TEST_CASE() local
89 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
90 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
112 const CBlastOptions& kOpts = opts->GetOptions(); in BOOST_AUTO_TEST_CASE() local
113 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
114 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
136 const CBlastOptions& kOpts = opts->GetOptions(); in BOOST_AUTO_TEST_CASE() local
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H A Dscoreblk_unit_test.cpp75 const CBlastOptions& kOpts = opts->GetOptions(); in BOOST_AUTO_TEST_CASE() local
76 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
77 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
120 const CBlastOptions& kOpts = opts->GetOptions(); in BOOST_AUTO_TEST_CASE() local
121 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
122 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
173 const CBlastOptions& kOpts = opts->GetOptions(); in BOOST_AUTO_TEST_CASE() local
174 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
175 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
248 const CBlastOptions& kOpts = opts->GetOptions(); in BOOST_AUTO_TEST_CASE() local
[all …]
H A Dblastoptions_unit_test.cpp347 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
348 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
516 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
517 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
604 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
605 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
875 const CBlastOptions& kOpts = opts->GetOptions(); in BOOST_AUTO_TEST_CASE() local
876 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
877 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
952 const CBlastOptions& kOpts = opts->GetOptions(); in BOOST_AUTO_TEST_CASE() local
[all …]
H A Dblastextend_unit_test.cpp271 const CBlastOptions& kOpts = opts_handle.GetOptions(); in BOOST_FIXTURE_TEST_SUITE() local
272 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_FIXTURE_TEST_SUITE()
273 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_FIXTURE_TEST_SUITE()
358 const CBlastOptions& kOpts = opts_handle.GetOptions(); in BOOST_AUTO_TEST_CASE() local
359 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
360 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
471 const CBlastOptions& kOpts = opts_handle.GetOptions(); in BOOST_AUTO_TEST_CASE() local
472 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
473 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
H A Dtraceback_unit_test.cpp224 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
225 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
359 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
360 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
492 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
493 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
619 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
620 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
862 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
863 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
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H A Dblastsetup_unit_test.cpp886 const CBlastOptions& kOpts = opts->GetOptions(); in BOOST_AUTO_TEST_CASE() local
887 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
888 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
1206 const CBlastOptions& kOpts = opts_handle->GetOptions(); in BOOST_AUTO_TEST_CASE() local
1213 kOpts.GetProgramType(), in BOOST_AUTO_TEST_CASE()
1334 const CBlastOptions& kOpts = opts->GetOptions(); in BOOST_AUTO_TEST_CASE() local
1335 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
1336 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE()
1373 const CBlastOptions& kOpts = opts->GetOptions(); in BOOST_AUTO_TEST_CASE() local
1374 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_AUTO_TEST_CASE()
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H A Drmblast_traceback_unit_test.cpp214 const CBlastOptions& kOpts = blaster.GetOptionsHandle().GetOptions(); in BOOST_FIXTURE_TEST_SUITE() local
215 EBlastProgramType prog = kOpts.GetProgramType(); in BOOST_FIXTURE_TEST_SUITE()
216 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_FIXTURE_TEST_SUITE()
H A Doptionshandle_unit_test.cpp265 const CBlastOptions& kOpts = opts->GetOptions(); in BOOST_AUTO_TEST_CASE() local
266 BOOST_REQUIRE_EQUAL(eAaLookupTable, kOpts.GetLookupTableType()); in BOOST_AUTO_TEST_CASE()
268 BOOST_REQUIRE_EQUAL(eCompressedAaLookupTable, kOpts.GetLookupTableType()); in BOOST_AUTO_TEST_CASE()
270 BOOST_REQUIRE_EQUAL(eAaLookupTable, kOpts.GetLookupTableType()); in BOOST_AUTO_TEST_CASE()
H A Dredoalignment_unit_test.cpp244 const CBlastOptions& kOpts = blaster.GetOptionsHandle().GetOptions(); in runRedoAlignmentCoreUnitTest() local
245 EBlastProgramType core_prog = kOpts.GetProgramType(); in runRedoAlignmentCoreUnitTest()
246 ENa_strand strand_opt = kOpts.GetStrandOption(); in runRedoAlignmentCoreUnitTest()
H A Dblastfilter_unit_test.cpp449 const CBlastOptions& kOpts, in setupQueryStructures() argument
455 EBlastProgramType prog = kOpts.GetProgramType(); in setupQueryStructures()
456 ENa_strand strand_opt = kOpts.GetStrandOption(); in setupQueryStructures()
1579 const CBlastOptions& kOpts = opts->GetOptions(); in setupQueryInfoForOffsetTranslation() local
1580 EBlastProgramType prog = kOpts.GetProgramType(); in setupQueryInfoForOffsetTranslation()
1581 ENa_strand strand_opt = kOpts.GetStrandOption(); in setupQueryInfoForOffsetTranslation()
H A Dsplit_query_unit_test.cpp214 const CBlastOptions& kOpts = opts->GetOptions(); in x_PrepareBlastQueryStructures() local
215 EBlastProgramType prog = kOpts.GetProgramType(); in x_PrepareBlastQueryStructures()
217 ? *strand : kOpts.GetStrandOption(); in x_PrepareBlastQueryStructures()
/dports/sysutils/kubectl/kubernetes-1.22.2/vendor/sigs.k8s.io/kustomize/kustomize/v4/commands/build/
H A Dbuild.go131 func HonorKustomizeFlags(kOpts *krusty.Options) *krusty.Options {
132 kOpts.DoLegacyResourceSort = getFlagReorderOutput() == legacy
133 kOpts.LoadRestrictions = getFlagLoadRestrictorValue()
137 kOpts.PluginConfig = c
139 kOpts.PluginConfig.HelmConfig.Enabled = theFlags.enable.helm
141 kOpts.PluginConfig.HelmConfig.Command = theFlags.helmCommand
142 kOpts.AddManagedbyLabel = isManagedByLabelEnabled()
143 return kOpts
/dports/lang/kturtle/kturtle-21.12.3/src/
H A Deditor.cpp295 long kOpts = fdialog->options(); in find() local
297 if (kOpts & KFind::CaseSensitive) { qOpts |= QTextDocument::FindCaseSensitively; } in find()
298 if (kOpts & KFind::FindBackwards) { qOpts |= QTextDocument::FindBackward; } in find()
299 if (kOpts & KFind::WholeWordsOnly) { qOpts |= QTextDocument::FindWholeWords; } in find()
307 long kOpts = fdialog->options(); in findNext() local
309 if (kOpts & KFind::CaseSensitive) { qOpts |= QTextDocument::FindCaseSensitively; } in findNext()
310 if (kOpts & KFind::FindBackwards) { qOpts |= QTextDocument::FindBackward; } in findNext()
311 if (kOpts & KFind::WholeWordsOnly) { qOpts |= QTextDocument::FindWholeWords; } in findNext()
319 long kOpts = fdialog->options(); in findPrev() local
323 if (!(kOpts & KFind::FindBackwards)) { qOpts |= QTextDocument::FindBackward; } in findPrev()
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/dports/sysutils/kubectl/kubernetes-1.22.2/staging/src/k8s.io/cli-runtime/pkg/resource/
H A Dkustomizevisitor.go40 kOpts := krusty.MakeDefaultOptions()
41 kOpts.DoLegacyResourceSort = true
42 k := krusty.MakeKustomizer(kOpts)