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Searched refs:kbp_array (Results 1 – 9 of 9) sorted by relevance

/dports/biology/ncbi-toolkit/ncbi/algo/blast/core/
H A Dblast_parameters.c284 Blast_KarlinBlk** kbp_array; in BlastInitialWordParametersUpdate() local
297 kbp_array = sbp->kbp_gap; in BlastInitialWordParametersUpdate()
299 kbp_array = sbp->kbp_std; in BlastInitialWordParametersUpdate()
356 kbp = kbp_array[context]; in BlastInitialWordParametersUpdate()
831 Blast_KarlinBlk** kbp_array; in BlastHitSavingParametersUpdate() local
855 kbp_array = sbp->kbp_gap; in BlastHitSavingParametersUpdate()
857 kbp_array = sbp->kbp; in BlastHitSavingParametersUpdate()
918 kbp = kbp_array[context]; in BlastHitSavingParametersUpdate()
964 kbp = kbp_array[context]; in BlastHitSavingParametersUpdate()
H A Dlink_hsps.c1509 Blast_KarlinBlk ** kbp_array, in s_LinkedHSPSetArraySetUp() argument
1523 kbp_array[hsp->context]->Lambda * hsp->score - in s_LinkedHSPSetArraySetUp()
1524 kbp_array[hsp->context]->logK; in s_LinkedHSPSetArraySetUp()
1626 Blast_KarlinBlk ** kbp_array; in s_BlastUnevenGapLinkHSPs() local
1638 kbp_array = sbp->kbp_gap; in s_BlastUnevenGapLinkHSPs()
1640 kbp_array = sbp->kbp; in s_BlastUnevenGapLinkHSPs()
1653 s_LinkedHSPSetArraySetUp(hsp_array, hspcnt, kbp_array, program); in s_BlastUnevenGapLinkHSPs()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/
H A Dblast_parameters.c284 Blast_KarlinBlk** kbp_array; in BlastInitialWordParametersUpdate() local
297 kbp_array = sbp->kbp_gap; in BlastInitialWordParametersUpdate()
299 kbp_array = sbp->kbp_std; in BlastInitialWordParametersUpdate()
356 kbp = kbp_array[context]; in BlastInitialWordParametersUpdate()
835 Blast_KarlinBlk** kbp_array; in BlastHitSavingParametersUpdate() local
859 kbp_array = sbp->kbp_gap; in BlastHitSavingParametersUpdate()
861 kbp_array = sbp->kbp; in BlastHitSavingParametersUpdate()
922 kbp = kbp_array[context]; in BlastHitSavingParametersUpdate()
968 kbp = kbp_array[context]; in BlastHitSavingParametersUpdate()
H A Dlink_hsps.c1509 Blast_KarlinBlk ** kbp_array, in s_LinkedHSPSetArraySetUp() argument
1523 kbp_array[hsp->context]->Lambda * hsp->score - in s_LinkedHSPSetArraySetUp()
1524 kbp_array[hsp->context]->logK; in s_LinkedHSPSetArraySetUp()
1626 Blast_KarlinBlk ** kbp_array; in s_BlastUnevenGapLinkHSPs() local
1638 kbp_array = sbp->kbp_gap; in s_BlastUnevenGapLinkHSPs()
1640 kbp_array = sbp->kbp; in s_BlastUnevenGapLinkHSPs()
1653 s_LinkedHSPSetArraySetUp(hsp_array, hspcnt, kbp_array, program); in s_BlastUnevenGapLinkHSPs()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/
H A Dblast_parameters.c284 Blast_KarlinBlk** kbp_array; in BlastInitialWordParametersUpdate() local
297 kbp_array = sbp->kbp_gap; in BlastInitialWordParametersUpdate()
299 kbp_array = sbp->kbp_std; in BlastInitialWordParametersUpdate()
356 kbp = kbp_array[context]; in BlastInitialWordParametersUpdate()
835 Blast_KarlinBlk** kbp_array; in BlastHitSavingParametersUpdate() local
859 kbp_array = sbp->kbp_gap; in BlastHitSavingParametersUpdate()
861 kbp_array = sbp->kbp; in BlastHitSavingParametersUpdate()
922 kbp = kbp_array[context]; in BlastHitSavingParametersUpdate()
968 kbp = kbp_array[context]; in BlastHitSavingParametersUpdate()
H A Dlink_hsps.c1509 Blast_KarlinBlk ** kbp_array, in s_LinkedHSPSetArraySetUp() argument
1523 kbp_array[hsp->context]->Lambda * hsp->score - in s_LinkedHSPSetArraySetUp()
1524 kbp_array[hsp->context]->logK; in s_LinkedHSPSetArraySetUp()
1626 Blast_KarlinBlk ** kbp_array; in s_BlastUnevenGapLinkHSPs() local
1638 kbp_array = sbp->kbp_gap; in s_BlastUnevenGapLinkHSPs()
1640 kbp_array = sbp->kbp; in s_BlastUnevenGapLinkHSPs()
1653 s_LinkedHSPSetArraySetUp(hsp_array, hspcnt, kbp_array, program); in s_BlastUnevenGapLinkHSPs()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/api/
H A Dblastoptions_unit_test.cpp697 static void MakeSomeInvalidKBP(Blast_KarlinBlk** kbp_array, in MakeSomeInvalidKBP() argument
709 Blast_KarlinBlkFree(kbp_array[index]); in MakeSomeInvalidKBP()
727 kbp_array[index] = kbp; in MakeSomeInvalidKBP()
779 static void MakeSomeValidKBP(Blast_KarlinBlk** kbp_array, Int4 num, in MakeSomeValidKBP() argument
785 Blast_KarlinBlkFree(kbp_array[index]); in MakeSomeValidKBP()
791 kbp_array[index] = kbp; in MakeSomeValidKBP()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/api/
H A Dblastoptions_unit_test.cpp697 static void MakeSomeInvalidKBP(Blast_KarlinBlk** kbp_array, in MakeSomeInvalidKBP() argument
709 Blast_KarlinBlkFree(kbp_array[index]); in MakeSomeInvalidKBP()
727 kbp_array[index] = kbp; in MakeSomeInvalidKBP()
779 static void MakeSomeValidKBP(Blast_KarlinBlk** kbp_array, Int4 num, in MakeSomeValidKBP() argument
785 Blast_KarlinBlkFree(kbp_array[index]); in MakeSomeValidKBP()
791 kbp_array[index] = kbp; in MakeSomeValidKBP()
/dports/biology/ncbi-toolkit/ncbi/tools/
H A Dblast.c11016 BLAST_KarlinBlkPtr * kbp_array, in new_link_hsps_setup() argument
11040 hsp->xsum = kbp_array[hsp->context]->Lambda * hsp->score - in new_link_hsps_setup()
11041 kbp_array[hsp->context]->logK; in new_link_hsps_setup()
11069 BLAST_KarlinBlkPtr PNTR kbp_array; in new_link_hsps() local
11086 kbp_array = search->sbp->kbp_gap; in new_link_hsps()
11088 kbp_array = search->sbp->kbp; in new_link_hsps()
11094 new_link_hsps_setup(search, kbp_array, hsp_array, hspcnt); in new_link_hsps()