/dports/biology/ncbi-toolkit/ncbi/algo/blast/core/ |
H A D | blast_parameters.c | 284 Blast_KarlinBlk** kbp_array; in BlastInitialWordParametersUpdate() local 297 kbp_array = sbp->kbp_gap; in BlastInitialWordParametersUpdate() 299 kbp_array = sbp->kbp_std; in BlastInitialWordParametersUpdate() 356 kbp = kbp_array[context]; in BlastInitialWordParametersUpdate() 831 Blast_KarlinBlk** kbp_array; in BlastHitSavingParametersUpdate() local 855 kbp_array = sbp->kbp_gap; in BlastHitSavingParametersUpdate() 857 kbp_array = sbp->kbp; in BlastHitSavingParametersUpdate() 918 kbp = kbp_array[context]; in BlastHitSavingParametersUpdate() 964 kbp = kbp_array[context]; in BlastHitSavingParametersUpdate()
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H A D | link_hsps.c | 1509 Blast_KarlinBlk ** kbp_array, in s_LinkedHSPSetArraySetUp() argument 1523 kbp_array[hsp->context]->Lambda * hsp->score - in s_LinkedHSPSetArraySetUp() 1524 kbp_array[hsp->context]->logK; in s_LinkedHSPSetArraySetUp() 1626 Blast_KarlinBlk ** kbp_array; in s_BlastUnevenGapLinkHSPs() local 1638 kbp_array = sbp->kbp_gap; in s_BlastUnevenGapLinkHSPs() 1640 kbp_array = sbp->kbp; in s_BlastUnevenGapLinkHSPs() 1653 s_LinkedHSPSetArraySetUp(hsp_array, hspcnt, kbp_array, program); in s_BlastUnevenGapLinkHSPs()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/ |
H A D | blast_parameters.c | 284 Blast_KarlinBlk** kbp_array; in BlastInitialWordParametersUpdate() local 297 kbp_array = sbp->kbp_gap; in BlastInitialWordParametersUpdate() 299 kbp_array = sbp->kbp_std; in BlastInitialWordParametersUpdate() 356 kbp = kbp_array[context]; in BlastInitialWordParametersUpdate() 835 Blast_KarlinBlk** kbp_array; in BlastHitSavingParametersUpdate() local 859 kbp_array = sbp->kbp_gap; in BlastHitSavingParametersUpdate() 861 kbp_array = sbp->kbp; in BlastHitSavingParametersUpdate() 922 kbp = kbp_array[context]; in BlastHitSavingParametersUpdate() 968 kbp = kbp_array[context]; in BlastHitSavingParametersUpdate()
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H A D | link_hsps.c | 1509 Blast_KarlinBlk ** kbp_array, in s_LinkedHSPSetArraySetUp() argument 1523 kbp_array[hsp->context]->Lambda * hsp->score - in s_LinkedHSPSetArraySetUp() 1524 kbp_array[hsp->context]->logK; in s_LinkedHSPSetArraySetUp() 1626 Blast_KarlinBlk ** kbp_array; in s_BlastUnevenGapLinkHSPs() local 1638 kbp_array = sbp->kbp_gap; in s_BlastUnevenGapLinkHSPs() 1640 kbp_array = sbp->kbp; in s_BlastUnevenGapLinkHSPs() 1653 s_LinkedHSPSetArraySetUp(hsp_array, hspcnt, kbp_array, program); in s_BlastUnevenGapLinkHSPs()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/ |
H A D | blast_parameters.c | 284 Blast_KarlinBlk** kbp_array; in BlastInitialWordParametersUpdate() local 297 kbp_array = sbp->kbp_gap; in BlastInitialWordParametersUpdate() 299 kbp_array = sbp->kbp_std; in BlastInitialWordParametersUpdate() 356 kbp = kbp_array[context]; in BlastInitialWordParametersUpdate() 835 Blast_KarlinBlk** kbp_array; in BlastHitSavingParametersUpdate() local 859 kbp_array = sbp->kbp_gap; in BlastHitSavingParametersUpdate() 861 kbp_array = sbp->kbp; in BlastHitSavingParametersUpdate() 922 kbp = kbp_array[context]; in BlastHitSavingParametersUpdate() 968 kbp = kbp_array[context]; in BlastHitSavingParametersUpdate()
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H A D | link_hsps.c | 1509 Blast_KarlinBlk ** kbp_array, in s_LinkedHSPSetArraySetUp() argument 1523 kbp_array[hsp->context]->Lambda * hsp->score - in s_LinkedHSPSetArraySetUp() 1524 kbp_array[hsp->context]->logK; in s_LinkedHSPSetArraySetUp() 1626 Blast_KarlinBlk ** kbp_array; in s_BlastUnevenGapLinkHSPs() local 1638 kbp_array = sbp->kbp_gap; in s_BlastUnevenGapLinkHSPs() 1640 kbp_array = sbp->kbp; in s_BlastUnevenGapLinkHSPs() 1653 s_LinkedHSPSetArraySetUp(hsp_array, hspcnt, kbp_array, program); in s_BlastUnevenGapLinkHSPs()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/api/ |
H A D | blastoptions_unit_test.cpp | 697 static void MakeSomeInvalidKBP(Blast_KarlinBlk** kbp_array, in MakeSomeInvalidKBP() argument 709 Blast_KarlinBlkFree(kbp_array[index]); in MakeSomeInvalidKBP() 727 kbp_array[index] = kbp; in MakeSomeInvalidKBP() 779 static void MakeSomeValidKBP(Blast_KarlinBlk** kbp_array, Int4 num, in MakeSomeValidKBP() argument 785 Blast_KarlinBlkFree(kbp_array[index]); in MakeSomeValidKBP() 791 kbp_array[index] = kbp; in MakeSomeValidKBP()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/api/ |
H A D | blastoptions_unit_test.cpp | 697 static void MakeSomeInvalidKBP(Blast_KarlinBlk** kbp_array, in MakeSomeInvalidKBP() argument 709 Blast_KarlinBlkFree(kbp_array[index]); in MakeSomeInvalidKBP() 727 kbp_array[index] = kbp; in MakeSomeInvalidKBP() 779 static void MakeSomeValidKBP(Blast_KarlinBlk** kbp_array, Int4 num, in MakeSomeValidKBP() argument 785 Blast_KarlinBlkFree(kbp_array[index]); in MakeSomeValidKBP() 791 kbp_array[index] = kbp; in MakeSomeValidKBP()
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/dports/biology/ncbi-toolkit/ncbi/tools/ |
H A D | blast.c | 11016 BLAST_KarlinBlkPtr * kbp_array, in new_link_hsps_setup() argument 11040 hsp->xsum = kbp_array[hsp->context]->Lambda * hsp->score - in new_link_hsps_setup() 11041 kbp_array[hsp->context]->logK; in new_link_hsps_setup() 11069 BLAST_KarlinBlkPtr PNTR kbp_array; in new_link_hsps() local 11086 kbp_array = search->sbp->kbp_gap; in new_link_hsps() 11088 kbp_array = search->sbp->kbp; in new_link_hsps() 11094 new_link_hsps_setup(search, kbp_array, hsp_array, hspcnt); in new_link_hsps()
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