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/dports/biology/plink/plink-ng-79b2df8c/1.9/
H A Dplink_ld.c4874 if (known21 != 0.0) { in calc_lnlike()
4875 lnlike += known21 * log(freq21); in calc_lnlike()
4892 double twice_tot = known11 + known12 + known21 + known22 + 2 * center_ct_d; in em_phase_hethet()
4922 freq21 = known21 * twice_tot_recip; in em_phase_hethet()
5047 double known21 = (double)(2 * counts[6] + counts[3] + counts[7]); in em_phase_hethet_nobase() local
5053 known21 -= (double)((int32_t)counts[15]); in em_phase_hethet_nobase()
5058 known21 -= ((double)(2 * counts[15] + counts[16])) * (1.0 - SQRT_HALF); in em_phase_hethet_nobase()
6801 double known21 = (double)(2 * counts[6] + counts[3] + counts[7]); in haploview_blocks_classify() local
6824 known21 -= (double)((int32_t)counts[12]); in haploview_blocks_classify()
6837 dyy = known21; in haploview_blocks_classify()
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