Searched refs:ksw_qinit (Results 1 – 3 of 3) sorted by relevance
| /dports/biology/trimadap/trimadap-0.1-3-gddfef21/ |
| H A D | ksw.c | 59 kswq_t *ksw_qinit(int size, int qlen, const uint8_t *query, int m, const int8_t *mat) in ksw_qinit() function
339 q = (qry && *qry)? *qry : ksw_qinit((xtra&KSW_XBYTE)? 1 : 2, qlen, query, m, mat); in ksw_align()
349 q = ksw_qinit(size, r.qe + 1, copy, m, mat); in ksw_align()
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| /dports/www/h2o-devel/h2o-dcc7134/deps/klib/ |
| H A D | ksw.c | 58 kswq_t *ksw_qinit(int size, int qlen, const uint8_t *query, int m, const int8_t *mat) in ksw_qinit() function
337 q = (qry && *qry)? *qry : ksw_qinit((xtra&KSW_XBYTE)? 1 : 2, qlen, query, m, mat); in ksw_align()
345 q = ksw_qinit(size, r.qe + 1, query, m, mat); in ksw_align()
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| /dports/biology/bwa/bwa-0.7.17/ |
| H A D | ksw.c | 65 kswq_t *ksw_qinit(int size, int qlen, const uint8_t *query, int m, const int8_t *mat) in ksw_qinit() function
352 q = (qry && *qry)? *qry : ksw_qinit((xtra&KSW_XBYTE)? 1 : 2, qlen, query, m, mat); in ksw_align2()
360 q = ksw_qinit(size, r.qe + 1, query, m, mat); in ksw_align2()
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