Searched refs:lDim0 (Results 1 – 4 of 4) sorted by relevance
| /dports/biology/seqan1/seqan-1.3.1/apps/razers/ |
| H A D | razers_spliced.h | 559 unsigned lDim0 = _max(0,(int)length(readSet[rseqNo])-(int)options.minMatchLen); in extendMatch() local
563 Seed<int,SimpleSeed> seed(lDim0, lDim1, rDim0, rDim1); in extendMatch()
570 ::std::cout << " lDim0: " << lDim0 << ::std::endl; in extendMatch()
575 ::std::cout << " readInf: "<< infix(readSet[rseqNo],lDim0,rDim0+1) << ::std::endl; in extendMatch()
608 unsigned lDim0 = 0; in extendMatch() local
612 Seed<int,SimpleSeed> seed(lDim0, lDim1, rDim0, rDim1); in extendMatch()
619 ::std::cout << " lDim0: " << lDim0 << ::std::endl; in extendMatch()
624 ::std::cout << " readInf: "<< infix(readSet[rseqNo],lDim0,rDim0+1) << ::std::endl; in extendMatch()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/razers/ |
| H A D | razers_spliced.h | 561 unsigned lDim0 = _max(0,(int)length(readSet[rseqNo])-(int)options.minMatchLen); in extendMatch() local
565 Seed<int,SimpleSeed> seed(lDim0, lDim1, rDim0, rDim1); in extendMatch()
572 ::std::cout << " lDim0: " << lDim0 << ::std::endl; in extendMatch()
577 ::std::cout << " readInf: "<< infix(readSet[rseqNo],lDim0,rDim0+1) << ::std::endl; in extendMatch()
610 unsigned lDim0 = 0; in extendMatch() local
614 Seed<int,SimpleSeed> seed(lDim0, lDim1, rDim0, rDim1); in extendMatch()
621 ::std::cout << " lDim0: " << lDim0 << ::std::endl; in extendMatch()
626 ::std::cout << " readInf: "<< infix(readSet[rseqNo],lDim0,rDim0+1) << ::std::endl; in extendMatch()
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| /dports/biology/seqan1/seqan-1.3.1/apps/splazers/ |
| H A D | razers_spliced.h | 590 unsigned lDim0 = _max(0,(int)length(readSet[rseqNo])-(int)options.minMatchLen); in extendMatch() local
596 Seed<int,SimpleSeed> seed(lDim0, lDim1, rDim0, rDim1); in extendMatch()
603 ::std::cout << " lDim0: " << lDim0 << ::std::endl; in extendMatch()
608 ::std::cout << " readInf: "<< infix(readSet[rseqNo],lDim0,rDim0+1) << ::std::endl; in extendMatch()
643 unsigned lDim0 = 0; in extendMatch() local
647 Seed<int,SimpleSeed> seed(lDim0, lDim1, rDim0, rDim1); in extendMatch()
654 ::std::cout << " lDim0: " << lDim0 << ::std::endl; in extendMatch()
659 ::std::cout << " readInf: "<< infix(readSet[rseqNo],lDim0,rDim0+1) << ::std::endl; in extendMatch()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/splazers/ |
| H A D | razers_spliced.h | 746 unsigned lDim0 = _max(0,(int)length(readSet[rseqNo])-(int)options.minMatchLen); in extendMatch() local
754 Seed<Simple> seed(lDim0, lDim1, rDim0+1, rDim1+1); in extendMatch()
761 ::std::cout << " lDim0: " << lDim0 << ::std::endl; in extendMatch()
766 ::std::cout << " readInf: "<< infix(readSet[rseqNo],lDim0,rDim0+1) << ::std::endl; in extendMatch()
810 unsigned lDim0 = 0; in extendMatch() local
815 Seed<Simple> seed(lDim0, lDim1, rDim0+1, rDim1+1); in extendMatch()
822 ::std::cout << " lDim0: " << lDim0 << ::std::endl; in extendMatch()
827 ::std::cout << " readInf: "<< infix(readSet[rseqNo],lDim0,rDim0+1) << ::std::endl; in extendMatch()
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