/dports/biology/mafft/mafft-7.267-without-extensions/core/ |
H A D | Galign11.c | 46 fprintf( stderr, "lastverticalw[%d] = %f\n", i, lastverticalw[i] ); in Atracking() 64 wm = lastverticalw[0]; in Atracking() 67 if( lastverticalw[i] >= wm ) in Atracking() 69 wm = lastverticalw[i]; in Atracking() 233 if( lastverticalw ) FreeFloatVec( lastverticalw ); lastverticalw = NULL; in G__align11() 333 FreeFloatVec( lastverticalw ); in G__align11() 359 lastverticalw = AllocateFloatVec( ll1+2 ); in G__align11() 711 static TLS double *lastverticalw; /* kufuu sureba iranai */ in G__align11_noalign() local 727 FreeFloatVec( lastverticalw ); in G__align11_noalign() 765 FreeFloatVec( lastverticalw ); in G__align11_noalign() [all …]
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H A D | SAalignmm.c | 49 static double Atracking( double *lasthorizontalw, double *lastverticalw, in Atracking() argument 66 fprintf( stderr, "lastverticalw[%d] = %f\n", i, lastverticalw[i] ); in Atracking() 74 wm = lastverticalw[0]; in Atracking() 77 if( lastverticalw[i] >= wm ) in Atracking() 79 wm = lastverticalw[i]; in Atracking() 176 static TLS double *lastverticalw; /* kufuu sureba iranai */ in Aalign() local 209 FreeFloatVec( lastverticalw ); in Aalign() 233 lastverticalw = AllocateFloatVec( ll1+2 ); in Aalign() 302 lastverticalw[0] = currentw[lgth2-1]; in Aalign() 352 lastverticalw[i] = currentw[lgth2-1]; in Aalign() [all …]
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H A D | Lalign11.c | 231 static TLS double *lastverticalw; /* kufuu sureba iranai */ in L__align11() local 279 FreeFloatVec( lastverticalw ); in L__align11() 334 FreeFloatVec( lastverticalw ); in L__align11() 359 lastverticalw = AllocateFloatVec( ll1+2 ); in L__align11() 436 lastverticalw[0] = currentw[lgth2-1]; in L__align11() 681 lastverticalw[i] = currentw[lgth2-1]; in L__align11() 801 FreeFloatVec( lastverticalw ); in L__align11_noalign() 834 FreeFloatVec( lastverticalw ); in L__align11_noalign() 860 lastverticalw = AllocateFloatVec( ll1+2 ); in L__align11_noalign() 939 lastverticalw[0] = currentw[lgth2-1]; in L__align11_noalign() [all …]
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H A D | genalign11.c | 30 static double gentracking( double *lasthorizontalw, double *lastverticalw, in gentracking() argument 47 fprintf( stderr, "lastverticalw[%d] = %f\n", i, lastverticalw[i] ); in gentracking() 140 static TLS double *lastverticalw; /* kufuu sureba iranai */ in genL__align11() local 176 FreeFloatVec( lastverticalw ); in genL__align11() 220 FreeFloatVec( lastverticalw ); in genL__align11() 249 lastverticalw = AllocateFloatVec( ll1+2 ); in genL__align11() 332 lastverticalw[0] = currentw[lgth2-1]; in genL__align11() 565 lastverticalw[i] = currentw[lgth2-1]; in genL__align11() 584 …gentracking( currentw, lastverticalw, seq1, seq2, mseq1, mseq2, cpmx1, cpmx2, ijpi, ijpj, off1pt, … in genL__align11()
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H A D | MSalign11.c | 47 static double Atracking( double *lasthorizontalw, double *lastverticalw, in Atracking() argument 64 fprintf( stderr, "lastverticalw[%d] = %f\n", i, lastverticalw[i] ); in Atracking() 314 static double *lastverticalw; /* kufuu sureba iranai */ in MSalign11() local 345 FreeFloatVec( lastverticalw ); in MSalign11() 374 lastverticalw = AllocateFloatVec( ll1+2 ); in MSalign11() 468 lastverticalw[0] = currentw[lgth2-1]; in MSalign11() 562 lastverticalw[i] = currentw[lgth2-1]; in MSalign11() 568 g = lastverticalw[i]; in MSalign11() 643 Atracking( currentw, lastverticalw, seq1, seq2, mseq1, mseq2, cpmx1, cpmx2, ijp ); in MSalign11()
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H A D | partSalignmm.c | 694 wm = lastverticalw[0]; in Atracking_localhom() 697 if( lastverticalw[i] >= wm ) in Atracking_localhom() 699 wm = lastverticalw[i]; in Atracking_localhom() 840 wm = lastverticalw[0]; in Atracking() 843 if( lastverticalw[i] >= wm ) in Atracking() 845 wm = lastverticalw[i]; in Atracking() 1042 FreeFloatVec( lastverticalw ); in partA__align() 1160 FreeFloatVec( lastverticalw ); in partA__align() 1366 lastverticalw[0] = currentw[lgth2-1]; in partA__align() 1731 FreeFloatVec( lastverticalw ); in partA__align_variousdist() [all …]
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H A D | Salignmm.c | 767 wm = lastverticalw[0]; in Atracking_localhom() 770 if( lastverticalw[i] >= wm ) in Atracking_localhom() 772 wm = lastverticalw[i]; in Atracking_localhom() 908 wm = lastverticalw[0]; in Atracking() 911 if( lastverticalw[i] >= wm ) in Atracking() 913 wm = lastverticalw[i]; in Atracking() 1104 FreeFloatVec( lastverticalw ); in A__align() 1228 FreeFloatVec( lastverticalw ); in A__align() 1475 lastverticalw[0] = currentw[lgth2-1]; in A__align() 1869 FreeFloatVec( lastverticalw ); in A__align_variousdist() [all …]
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H A D | MSalignmm.c | 206 wm = lastverticalw[0]; in Atracking() 209 if( lastverticalw[i] >= wm ) in Atracking() 211 wm = lastverticalw[i]; in Atracking() 230 wm = lastverticalw[0]; in Atracking() 233 if( lastverticalw[i] >= wm ) in Atracking() 235 wm = lastverticalw[i]; in Atracking() 457 lastverticalw[0] = currentw[lgth2-1]; in MSalignmm_tanni() 562 FreeFloatVec( lastverticalw ); in MSalignmm_tanni() 599 FreeFloatVec( lastverticalw ); in freearrays_rec1() 2182 FreeFloatVec( lastverticalw ); in MSalignmm_tanni_variousdist() [all …]
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H A D | suboptalign11.c | 157 static double *lastverticalw; /* kufuu sureba iranai */ in suboptalign11() local 222 FreeFloatVec( lastverticalw ); in suboptalign11() 252 lastverticalw = AllocateFloatVec( ll1+2 ); in suboptalign11() 335 lastverticalw[0] = currentw[lgth2-1]; in suboptalign11() 603 lastverticalw[i] = currentw[lgth2-1]; in suboptalign11()
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H A D | Lalignmm.c | 271 fprintf( stderr, "lastverticalw[%d] = %f\n", i, lastverticalw[i] ); 373 double *lastverticalw; /* kufuu sureba iranai */ in MSalign2m2m_rec() local 511 lastverticalw = AllocateFloatVec( ll1+2 ); in MSalign2m2m_rec() 574 lastverticalw[0] = currentw[lgth2-1]; in MSalign2m2m_rec() 702 lastverticalw[i] = currentw[lgth2-1]; in MSalign2m2m_rec() 1220 FreeFloatVec( lastverticalw ); 1273 double *lastverticalw; /* kufuu sureba iranai */ in MSalignmm_rec() local 1411 lastverticalw = AllocateFloatVec( ll1+2 ); in MSalignmm_rec() 1474 lastverticalw[0] = currentw[lgth2-1]; in MSalignmm_rec() 1602 lastverticalw[i] = currentw[lgth2-1]; in MSalignmm_rec() [all …]
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H A D | Dalignmm.c | 659 wm = lastverticalw[0]; in Atracking_localhom() 662 if( lastverticalw[i] >= wm ) in Atracking_localhom() 664 wm = lastverticalw[i]; in Atracking_localhom() 800 wm = lastverticalw[0]; in Atracking() 803 if( lastverticalw[i] >= wm ) in Atracking() 805 wm = lastverticalw[i]; in Atracking() 2814 FreeFloatVec( lastverticalw ); in D__align() 2952 FreeFloatVec( lastverticalw ); in D__align() 3484 lastverticalw[0] = currentw[lgth2-1]; in D__align() 4652 FreeFloatVec( lastverticalw ); in D__align_variousdist() [all …]
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