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/dports/biology/py-biopython/biopython-1.79/Bio/SubsMat/
H A D__init__.py444 lo_mat = LogOddsMatrix(subs_mat)
447 lo_mat[key] = -999
449 lo_mat[key] = round(factor * log(value) / log(logbase), round_digit)
450 mat_min = min(lo_mat.values())
452 for i in lo_mat:
453 if lo_mat[i] <= -999:
454 lo_mat[i] = mat_min
455 return lo_mat
473 lo_mat = _build_log_odds_mat(subs_mat, logbase, factor, round_digit, keep_nd)
474 return lo_mat
/dports/devel/ppl/ppl-1.2/src/
H A DOctagonal_Shape_templates.hh3920 OR_Matrix<N>& lo_mat = limiting_octagon.matrix; in get_limiting_octagon() local
3921 row_iterator lo_iter = lo_mat.row_begin() + i; in get_limiting_octagon()
H A Dppl.hh.dist74974 OR_Matrix<N>& lo_mat = limiting_octagon.matrix;
74975 row_iterator lo_iter = lo_mat.row_begin() + i;