Searched refs:loglk (Results 1 – 7 of 7) sorted by relevance
/dports/biology/py-loompy/loompy-3.0.6/loompy/ |
H A D | cell_calling.py | 165 loglk = np.zeros(num_bcs) 171 loglk[chunk] = sp_stats.multinomial.logpmf(matrix_chunk, n, p=profile_p) 172 return loglk 192 loglk = np.zeros((len(distinct_n), num_sims), dtype=float) 204 loglk[0, sim_idx] = curr_loglk 225 loglk[i, sim_idx] = curr_loglk 227 return distinct_n, loglk
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/dports/biology/phyml/phyml-3.3.20200621/src/ |
H A D | times.c | 480 phydbl loglk; in TIMES_Lk_Yule_Joint() local 503 loglk = .0; in TIMES_Lk_Yule_Joint() 558 return loglk; in TIMES_Lk_Yule_Joint() 571 phydbl loglk; in TIMES_Lk_Yule_Order() local 614 loglk = 0.0; in TIMES_Lk_Yule_Order() 627 if(isinf(loglk) || isnan(loglk)) in TIMES_Lk_Yule_Order() 645 if(isinf(loglk) || isnan(loglk)) in TIMES_Lk_Yule_Order() 658 return(loglk); in TIMES_Lk_Yule_Order() 1204 phydbl loglk; in TIMES_Lk_Yule_Order_Root_Cond() local 1247 loglk = 0.0; in TIMES_Lk_Yule_Order_Root_Cond() [all …]
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H A D | geo.c | 685 phydbl loglk; in GEO_Lk() local 697 loglk = .0; in GEO_Lk() 757 loglk -= R * FABS(tree->times->nd_t[curr_n->num] - tree->times->nd_t[prev_n->num]); in GEO_Lk() 758 loglk += log(t->r_mat[dep * t->ldscape_sz + arr]); in GEO_Lk() 783 loglk -= log(t->ldscape_sz); in GEO_Lk() 792 loglk += log(t->r_mat[dep * t->ldscape_sz + arr]); in GEO_Lk() 797 loglk -= log(sum); in GEO_Lk() 799 tree->geo->c_lnL = loglk; in GEO_Lk() 801 return loglk; in GEO_Lk()
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H A D | lk.h | 38 …l Lk_Given_Two_Seq(calign *data, int numseq1, int numseq2, phydbl dist, t_mod *mod, phydbl *loglk);
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H A D | lk.c | 1907 …bl Lk_Given_Two_Seq(calign *data, int numseq1, int numseq2, phydbl dist, t_mod *mod, phydbl *loglk) in Lk_Given_Two_Seq() argument 1964 *loglk = 0; in Lk_Given_Two_Seq() 2012 *loglk += data->wght[i] * log_site_lk;/* sort sum terms ? No global effect*/ in Lk_Given_Two_Seq() 2023 return *loglk; in Lk_Given_Two_Seq()
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/dports/biology/fasttree/FastTree-2.1.10_5/ |
H A D | FastTree-2.1.10.c | 2323 loglk, in main() 2397 loglk, in main() 5403 return(loglk); in PairLogLk() 5434 return(loglk); in MLQuartetLogLk() 5844 return(loglk); in TreeLogLk() 7186 if (loglk[ACvsBD] > loglk[ADvsBC]) { in TestSplitsML() 7200 if (loglk[ABvsCD] >= loglk[ACvsBD] && loglk[ABvsCD] >= loglk[ADvsBC]) in TestSplitsML() 7202 else if (loglk[ACvsBD] >= loglk[ABvsCD] && loglk[ACvsBD] >= loglk[ADvsBC]) in TestSplitsML() 7228 double delta = loglk[choice] - loglk[ABvsCD]; in TestSplitsML() 7477 double delta1 = loglk[0]-loglk[1]; in SHSupport() [all …]
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/dports/devel/plan9port/plan9port-1f098efb7370a0b28306d10681e21883fb1c1507/src/cmd/venti/srv/ |
H A D | mgr.c | 180 static QLock loglk; variable 626 qlock(&loglk); in piper() 629 qunlock(&loglk); in piper()
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