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Searched refs:loglk (Results 1 – 7 of 7) sorted by relevance

/dports/biology/py-loompy/loompy-3.0.6/loompy/
H A Dcell_calling.py165 loglk = np.zeros(num_bcs)
171 loglk[chunk] = sp_stats.multinomial.logpmf(matrix_chunk, n, p=profile_p)
172 return loglk
192 loglk = np.zeros((len(distinct_n), num_sims), dtype=float)
204 loglk[0, sim_idx] = curr_loglk
225 loglk[i, sim_idx] = curr_loglk
227 return distinct_n, loglk
/dports/biology/phyml/phyml-3.3.20200621/src/
H A Dtimes.c480 phydbl loglk; in TIMES_Lk_Yule_Joint() local
503 loglk = .0; in TIMES_Lk_Yule_Joint()
558 return loglk; in TIMES_Lk_Yule_Joint()
571 phydbl loglk; in TIMES_Lk_Yule_Order() local
614 loglk = 0.0; in TIMES_Lk_Yule_Order()
627 if(isinf(loglk) || isnan(loglk)) in TIMES_Lk_Yule_Order()
645 if(isinf(loglk) || isnan(loglk)) in TIMES_Lk_Yule_Order()
658 return(loglk); in TIMES_Lk_Yule_Order()
1204 phydbl loglk; in TIMES_Lk_Yule_Order_Root_Cond() local
1247 loglk = 0.0; in TIMES_Lk_Yule_Order_Root_Cond()
[all …]
H A Dgeo.c685 phydbl loglk; in GEO_Lk() local
697 loglk = .0; in GEO_Lk()
757 loglk -= R * FABS(tree->times->nd_t[curr_n->num] - tree->times->nd_t[prev_n->num]); in GEO_Lk()
758 loglk += log(t->r_mat[dep * t->ldscape_sz + arr]); in GEO_Lk()
783 loglk -= log(t->ldscape_sz); in GEO_Lk()
792 loglk += log(t->r_mat[dep * t->ldscape_sz + arr]); in GEO_Lk()
797 loglk -= log(sum); in GEO_Lk()
799 tree->geo->c_lnL = loglk; in GEO_Lk()
801 return loglk; in GEO_Lk()
H A Dlk.h38 …l Lk_Given_Two_Seq(calign *data, int numseq1, int numseq2, phydbl dist, t_mod *mod, phydbl *loglk);
H A Dlk.c1907 …bl Lk_Given_Two_Seq(calign *data, int numseq1, int numseq2, phydbl dist, t_mod *mod, phydbl *loglk) in Lk_Given_Two_Seq() argument
1964 *loglk = 0; in Lk_Given_Two_Seq()
2012 *loglk += data->wght[i] * log_site_lk;/* sort sum terms ? No global effect*/ in Lk_Given_Two_Seq()
2023 return *loglk; in Lk_Given_Two_Seq()
/dports/biology/fasttree/FastTree-2.1.10_5/
H A DFastTree-2.1.10.c2323 loglk, in main()
2397 loglk, in main()
5403 return(loglk); in PairLogLk()
5434 return(loglk); in MLQuartetLogLk()
5844 return(loglk); in TreeLogLk()
7186 if (loglk[ACvsBD] > loglk[ADvsBC]) { in TestSplitsML()
7200 if (loglk[ABvsCD] >= loglk[ACvsBD] && loglk[ABvsCD] >= loglk[ADvsBC]) in TestSplitsML()
7202 else if (loglk[ACvsBD] >= loglk[ABvsCD] && loglk[ACvsBD] >= loglk[ADvsBC]) in TestSplitsML()
7228 double delta = loglk[choice] - loglk[ABvsCD]; in TestSplitsML()
7477 double delta1 = loglk[0]-loglk[1]; in SHSupport()
[all …]
/dports/devel/plan9port/plan9port-1f098efb7370a0b28306d10681e21883fb1c1507/src/cmd/venti/srv/
H A Dmgr.c180 static QLock loglk; variable
626 qlock(&loglk); in piper()
629 qunlock(&loglk); in piper()