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/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/graphs/
H A DJunctionTreeKBestHaplotypeFinderUnitTest.java598 int longReadLength = 20; in testOrphanedSubBranchDueToLackingOldJunctionTree() local
608 for (int i = 0; i + longReadLength < ref.length(); i++) { in testOrphanedSubBranchDueToLackingOldJunctionTree()
609 … assembler.addSequence("anonymous", getBytes(haplotype1.substring(i, i + longReadLength)), false); in testOrphanedSubBranchDueToLackingOldJunctionTree()