Searched refs:longseq (Results 1 – 8 of 8) sorted by relevance
/dports/biology/viennarna/ViennaRNA-2.4.18/tests/perl5/ |
H A D | test-RNA-pf_window.pl | 140 $bpp = RNA::pfl_fold($longseq, 200, 150, 0.01); 159 $up = RNA::pfl_fold_up($longseq, 10, 200, 150); 187 $fc = new RNA::fold_compound($longseq, $md, RNA::OPTION_WINDOW); 311 foreach my $i (1..length($longseq)) { 315 foreach my $i (1..length($longseq)) { 316 foreach my $j (($i + 1)..length($longseq)) { 354 foreach my $i (1..length($longseq)) { 358 foreach my $i (1..length($longseq)) { 359 foreach my $j (($i + 1)..length($longseq)) { 370 foreach my $i (1..length($longseq)) { [all …]
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/dports/biology/viennarna/ViennaRNA-2.4.18/tests/python/ |
H A D | test-RNA-pf_window.py | 91 bpp = RNA.pfl_fold(longseq, 200, 150, 0.01) 102 up = RNA.pfl_fold_up(longseq, 10, 200, 150) 117 fc = RNA.fold_compound(longseq, md, RNA.OPTION_WINDOW) 219 for i in range(1, len(longseq) + 1): 222 for i in range(1, len(longseq)): 223 for j in range(i + 1, len(longseq) + 1): 253 fc = RNA.fold_compound(longseq, md, RNA.OPTION_WINDOW) 259 for i in range(1, len(longseq) + 1): 262 for i in range(1, len(longseq)): 263 for j in range(i + 1, len(longseq) + 1): [all …]
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H A D | test-RNA-mfe_window.py | 9 longseq = "AUUUCCACUAGAGAAGGUCUAGAGUGUUUGUCGUUUGUCAGAAGUCCCUAUUCCAGGUACGAACACGGUGGAUAUGUUCGACGACAGG… variable
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/dports/biology/viennarna/ViennaRNA-2.4.18/tests/python3/ |
H A D | test-RNA-pf_window.py3 | 91 bpp = RNA.pfl_fold(longseq, 200, 150, 0.01) 102 up = RNA.pfl_fold_up(longseq, 10, 200, 150) 117 fc = RNA.fold_compound(longseq, md, RNA.OPTION_WINDOW) 219 for i in range(1, len(longseq) + 1): 222 for i in range(1, len(longseq)): 223 for j in range(i + 1, len(longseq) + 1): 253 fc = RNA.fold_compound(longseq, md, RNA.OPTION_WINDOW) 259 for i in range(1, len(longseq) + 1): 262 for i in range(1, len(longseq)): 263 for j in range(i + 1, len(longseq) + 1): [all …]
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H A D | test-RNA-mfe_window.py3 | 9 longseq = "AUUUCCACUAGAGAAGGUCUAGAGUGUUUGUCGUUUGUCAGAAGUCCCUAUUCCAGGUACGAACACGGUGGAUAUGUUCGACGACAGG…
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/dports/biology/paml/paml4.9j/src/ |
H A D | evolver.c | 723 int is, h, i, j, ison, from, n = com.ncode, longseq = 100000; in Evolve() local 773 if (com.ls > longseq) printf("\r nodes %2d -> %2d, evolving . . ", inode + 1, ison + 1); in Evolve() 778 if (inode == tree.root && com.ls > longseq) printf("\r%s", strc(50, ' ')); in Evolve()
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/dports/biology/emboss/EMBOSS-6.6.0/emboss/ |
H A D | edialign.c | 504 ajint *longseq, 2409 ajint nbreseq, ajint *longseq) in edialign_init_seq() argument 2421 clos->seq[x].longueur = longseq[x]; in edialign_init_seq() 2422 if (clos->maxLong < longseq[x]) in edialign_init_seq() 2423 clos->maxLong = longseq[x]; in edialign_init_seq() 2463 ajint *longseq, in edialign_newAligGraphClosure() argument 2471 edialign_init_seq(clos, nbreseq, longseq); in edialign_newAligGraphClosure()
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/dports/math/plantri/plantri52/ |
H A D | fullgen.c | 1356 int longseq[14]; in sequenz_kanonisch() local 1360 for (i=0; sequenz[i] != leer; i++) { longseq[i]=sequenz[i]; in sequenz_kanonisch() 1361 if (longseq[i]==max) j=0; in sequenz_kanonisch() 1362 else if (longseq[i]>max) { return(0); } in sequenz_kanonisch() 1367 for (j=0; j<laenge; i++, j++) longseq[i]=sequenz[j]; in sequenz_kanonisch() 1370 if (longseq[j]==max) in sequenz_kanonisch() 1371 { for (i=1; (i<laenge) && (longseq[j+i]==sequenz[i]) ; i++); in sequenz_kanonisch() 1372 if (longseq[j+i]>sequenz[i]) in sequenz_kanonisch()
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