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/dports/biology/stringtie/stringtie-2.1.1/
H A Drlink.cpp1729 CGraphnode *longtrim(int s, int g, int refstart,int nodeend, int &nls, int &nle, bool &startcov, bo… in longtrim() function
2780 …if(longreads && (lstart.Count() || lend.Count())) graphnode=longtrim(s,g,refstart,gstart,nls,nle,d… in create_graph()
2798 …else if(lstart.Count() || lend.Count()) graphnode=longtrim(s,g,refstart,junction[njs]->start,nls,n… in create_graph()
2889 …if(longreads && (lstart.Count() || lend.Count())) graphnode=longtrim(s,g,refstart,start,nls,nle,dr… in create_graph()
2901 …else if(lstart.Count() || lend.Count()) graphnode=longtrim(s,g,refstart,pos-1,nls,nle,dropcov,fals… in create_graph()
2965 …if(longreads && (lstart.Count() || lend.Count())) graphnode=longtrim(s,g,refstart,start,nls,nle,dr… in create_graph()
2977 …else if(lstart.Count() || lend.Count()) graphnode=longtrim(s,g,refstart,endbundle,nls,nle,dropcov,… in create_graph()