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Searched refs:m2ali_s (Results 1 – 6 of 6) sorted by relevance

/dports/biology/tRNAscan-SE/tRNAscan-SE-2.0/src/
H A Dstructs.c106 struct m2ali_s *
109 struct m2ali_s *stack; in Init_m2ali()
111 if ((stack = (struct m2ali_s *) malloc (sizeof(struct m2ali_s))) == NULL) in Init_m2ali()
118 Push_m2ali(struct m2ali_s *stack, in Push_m2ali()
123 struct m2ali_s *new; in Push_m2ali()
125 if ((new = (struct m2ali_s *) malloc (sizeof(struct m2ali_s))) == NULL) in Push_m2ali()
135 Pop_m2ali(struct m2ali_s *stack, in Pop_m2ali()
140 struct m2ali_s *old; in Pop_m2ali()
156 Free_m2ali( struct m2ali_s *stack ) in Free_m2ali()
H A Dfuncs.h156 extern struct m2ali_s *Init_m2ali(void);
157 extern void Push_m2ali(struct m2ali_s *stack, int nodeidx, int type, struct align_s *after);
158 extern int Pop_m2ali(struct m2ali_s *stack, int *ret_nodeidx, int *ret_type,
160 extern void Free_m2ali( struct m2ali_s *stack );
H A Dstructs.h217 struct m2ali_s { struct
221 struct m2ali_s *nxt; argument
H A Demit.c68 struct m2ali_s *emstack; in EmitSequence()
208 struct m2ali_s *stack; /* pushdown stack for traversing model */ in EmitBestSequence()
H A Dalign.c47 struct m2ali_s *stack; /* stack used to traverse the model cv */ in create_master()
H A Dmodel.c183 struct m2ali_s *bifstack; /* pda for deferring bifurc connection assignment */ in RearrangeCM()