Searched refs:mRNAcoverage (Results 1 – 3 of 3) sorted by relevance
257 Int4 mRNAcoverage; /* percentage of the mRNA contained in this alignment */ member369 FloatHi mRNAcoverage; /* percentage of the mRNA contained in this alignment */ member
1553 …if (srip_tmp->smp == NULL || (srip_tmp->smp->mRNAcoverage < spot->lencutoff && !srip_tmp->fallsoff… in SPI_SortRegionsByScore()1621 if (srip1->smp->mRNAcoverage > srip2->smp->mRNAcoverage) in SPI_CompareRegions()1623 else if (srip1->smp->mRNAcoverage < srip2->smp->mRNAcoverage) in SPI_CompareRegions()1847 fprintf(ofp, "%s coverage: %d%%\n", tmpstring, srip->smp->mRNAcoverage); in SPI_PrintResult()2326 fprintf(ofp, "mRNA coverage: %.1f%%\n", herd->mRNAcoverage); in SPI_PrintHerdResult()3130 herd->mRNAcoverage = 100*((FloatHi)len/(FloatHi)bsp_mrna->length); in SPI_GetHerdInfo()5255 smp->mRNAcoverage = (100*len)/len1; in SPI_AdjustForSplice()9380 smp->mRNAcoverage = (100*len)/(context.right - context.left); in SPI_GetResultsForCDS()9512 smp->mRNAcoverage = (100*len)/(context.right - context.left); in SPI_GetResultsForCDS()9996 if (revcmp->smp->mRNAcoverage > srip->smp->mRNAcoverage - SPI_COVERDIFF) in SPI_CheckSplicesForRevComp()
3575 sprintf(tmp, "mRNA coverage: %d%%.", spidp->mRNAcoverage); in Ing_PrintSpideyReport()3637 sprintf(tmp, "mRNA coverage: %d%%.", spidp->mRNAcoverage); in Ing_PrintSpideyReport()