Searched refs:m_J_penalty (Results 1 – 6 of 6) sorted by relevance
73 int m_J_penalty; //the mismatch penalty for J gene search member in CIgBlastOptions
402 …if (m_IgOptions->m_DetectOverlap && m_IgOptions->m_J_penalty == -3 && m_IgOptions->m_D_penalty == … in Run()528 opts.SetMismatchPenalty(m_IgOptions->m_J_penalty); in x_SetupDJSearch()559 …if (m_IgOptions->m_DetectOverlap && m_IgOptions->m_J_penalty == -3 && m_IgOptions->m_D_penalty == … in x_SetupDJSearch()1029 if (m_IgOptions->m_DetectOverlap && m_IgOptions->m_J_penalty == -3 && in x_FindDJAln()
1797 m_IgOptions->m_J_penalty = args[kArgJPenalty].AsInteger(); in ExtractAlgorithmOptions()