/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objmgr/impl/ |
H A D | heap_scope.hpp | 71 return m_Scope.NotEmpty(); in IsSet() 75 return !m_Scope; in IsNull() 78 DECLARE_OPERATOR_BOOL_REF(m_Scope); 82 return m_Scope == scope.m_Scope; in operator ==() 86 return m_Scope != scope.m_Scope; in operator !=() 90 return m_Scope < scope.m_Scope; in operator <() 125 m_Scope.Reset(); in Reset() 130 m_Scope.Swap(scope.m_Scope); in Swap() 135 CRef<CObject> m_Scope; member in CHeapScope
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H A D | seq_entry_edit_commands.hpp | 100 m_RetHandle = Action::Do(m_Scope, m_Handle, m_Data); in Do() 113 m_Scope.SelectNone(m_Handle); in Undo() 125 CScope_Impl& m_Scope; member in CSeq_entry_Select_EditCommand 150 CScope_Impl& m_Scope; member in CSeq_entry_SelectNone_EditCommand 164 : m_Handle(handle), m_Scope(scope), m_Index(-1) {} in CSeq_entry_Remove_EditCommand() 174 CScope_Impl& m_Scope; member in CSeq_entry_Remove_EditCommand 187 : m_Handle(handle), m_Scope(scope) {} in CRemoveTSE_EditCommand() 196 CScope_Impl& m_Scope; member in CRemoveTSE_EditCommand 286 m_AnnotHandle = m_Scope.AttachAnnot(m_Handle, in Do() 301 m_Scope.RemoveAnnot(m_AnnotHandle); in Undo() [all …]
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objmgr/impl/ |
H A D | heap_scope.hpp | 71 return m_Scope.NotEmpty(); in IsSet() 75 return !m_Scope; in IsNull() 78 DECLARE_OPERATOR_BOOL_REF(m_Scope); 82 return m_Scope == scope.m_Scope; in operator ==() 86 return m_Scope != scope.m_Scope; in operator !=() 90 return m_Scope < scope.m_Scope; in operator <() 125 m_Scope.Reset(); in Reset() 130 m_Scope.Swap(scope.m_Scope); in Swap() 135 CRef<CObject> m_Scope; member in CHeapScope
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H A D | seq_entry_edit_commands.hpp | 100 m_RetHandle = Action::Do(m_Scope, m_Handle, m_Data); in Do() 113 m_Scope.SelectNone(m_Handle); in Undo() 125 CScope_Impl& m_Scope; member in CSeq_entry_Select_EditCommand 150 CScope_Impl& m_Scope; member in CSeq_entry_SelectNone_EditCommand 164 : m_Handle(handle), m_Scope(scope), m_Index(-1) {} in CSeq_entry_Remove_EditCommand() 174 CScope_Impl& m_Scope; member in CSeq_entry_Remove_EditCommand 187 : m_Handle(handle), m_Scope(scope) {} in CRemoveTSE_EditCommand() 196 CScope_Impl& m_Scope; member in CRemoveTSE_EditCommand 286 m_AnnotHandle = m_Scope.AttachAnnot(m_Handle, in Do() 301 m_Scope.RemoveAnnot(m_AnnotHandle); in Undo() [all …]
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/dports/devel/codeblocks/codeblocks-20.03/src/plugins/contrib/ThreadSearch/ |
H A D | ThreadSearchFindData.h | 39 bool MustSearchInOpenFiles() {return (m_Scope & ScopeOpenFiles) != 0;} in MustSearchInOpenFiles() 40 bool MustSearchInProject () {return (m_Scope & ScopeProjectFiles) != 0;} in MustSearchInProject() 41 bool MustSearchInWorkspace() {return (m_Scope & ScopeWorkspaceFiles) != 0;} in MustSearchInWorkspace() 42 bool MustSearchInDirectory() {return (m_Scope & ScopeDirectoryFiles) != 0;} in MustSearchInDirectory() 43 bool MustSearchInTarget () {return (m_Scope & ScopeTargetFiles) != 0;} in MustSearchInTarget() 51 void SetScope (int scope) {m_Scope = scope;} in SetScope() 62 int GetScope() const {return m_Scope;} in GetScope() 77 int m_Scope; variable
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H A D | ThreadSearchFindData.cpp | 23 ,m_Scope(ScopeProjectFiles) in ThreadSearchFindData() 38 ,m_Scope (findData.m_Scope) in ThreadSearchFindData() 57 m_Scope = findData.m_Scope; in operator =() 71 m_Scope |= scope; in UpdateSearchScope() 73 m_Scope &= ~scope; in UpdateSearchScope()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/ |
H A D | heap_scope.cpp | 59 m_Scope.Reset(scope->m_Impl->m_HeapScope); in BEGIN_SCOPE() 60 _ASSERT(m_Scope); in BEGIN_SCOPE() 63 m_Scope.Reset(); in BEGIN_SCOPE() 70 return static_cast<CScope&>(m_Scope.GetNCObject()); in GetScope() 76 return static_cast<CScope*>(m_Scope.GetNCPointerOrNull()); in GetScopeOrNull()
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H A D | seq_loc_mapper.cpp | 86 : m_Scope(scope) in CScope_Mapper_Sequence_Info() 177 m_Scope(scope) in CSeq_loc_Mapper() 187 m_Scope(scope) in CSeq_loc_Mapper() 198 m_Scope(scope) in CSeq_loc_Mapper() 209 m_Scope(scope) in CSeq_loc_Mapper() 220 m_Scope(scope) in CSeq_loc_Mapper() 232 m_Scope(scope) in CSeq_loc_Mapper() 244 m_Scope(scope) in CSeq_loc_Mapper() 285 m_Scope(scope) in CSeq_loc_Mapper() 328 m_Scope(scope) in CSeq_loc_Mapper() [all …]
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H A D | seq_entry_edit_commands.cpp | 49 : m_Handle(handle), m_Scope(scope) in BEGIN_SCOPE() 66 m_Scope.SelectNone(m_Handle); in Do() 81 m_Scope.SelectSeq(m_Handle, m_BioseqHandle); in Undo() 86 m_Scope.SelectSet(m_Handle, m_BioseqSetHandle); in Undo() 107 m_Scope.RemoveEntry(m_Handle); in Do() 116 m_Scope.AttachEntry(m_ParentHandle, m_Handle, m_Index); in Undo() 137 m_Scope.RemoveTopLevelSeqEntry(tse); in Do()
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H A D | prefetch_actions.cpp | 50 if ( m_Scope.IsNull() ) { in GetScope() 51 m_Scope.Set(new CScope(m_BaseScope->GetObjectManager())); in GetScope() 52 (*m_Scope).AddScope(*m_BaseScope); in GetScope() 54 return m_Scope; in GetScope() 323 : m_Scope(scope), in CPrefetchBioseqActionSource() 331 : m_Scope(scope), in CPrefetchBioseqActionSource() 342 ret.Reset(new CPrefetchBioseq(m_Scope, id)); in GetNextAction() 351 : m_Scope(scope), in CPrefetchFeat_CIActionSource() 361 : m_Scope(scope), in CPrefetchFeat_CIActionSource() 373 ret.Reset(new CPrefetchFeat_CI(m_Scope, id, in GetNextAction()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/ |
H A D | heap_scope.cpp | 59 m_Scope.Reset(scope->m_Impl->m_HeapScope); in BEGIN_SCOPE() 60 _ASSERT(m_Scope); in BEGIN_SCOPE() 63 m_Scope.Reset(); in BEGIN_SCOPE() 70 return static_cast<CScope&>(m_Scope.GetNCObject()); in GetScope() 76 return static_cast<CScope*>(m_Scope.GetNCPointerOrNull()); in GetScopeOrNull()
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H A D | seq_loc_mapper.cpp | 86 : m_Scope(scope) in CScope_Mapper_Sequence_Info() 177 m_Scope(scope) in CSeq_loc_Mapper() 187 m_Scope(scope) in CSeq_loc_Mapper() 198 m_Scope(scope) in CSeq_loc_Mapper() 209 m_Scope(scope) in CSeq_loc_Mapper() 220 m_Scope(scope) in CSeq_loc_Mapper() 232 m_Scope(scope) in CSeq_loc_Mapper() 244 m_Scope(scope) in CSeq_loc_Mapper() 285 m_Scope(scope) in CSeq_loc_Mapper() 328 m_Scope(scope) in CSeq_loc_Mapper() [all …]
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H A D | seq_entry_edit_commands.cpp | 49 : m_Handle(handle), m_Scope(scope) in BEGIN_SCOPE() 66 m_Scope.SelectNone(m_Handle); in Do() 81 m_Scope.SelectSeq(m_Handle, m_BioseqHandle); in Undo() 86 m_Scope.SelectSet(m_Handle, m_BioseqSetHandle); in Undo() 107 m_Scope.RemoveEntry(m_Handle); in Do() 116 m_Scope.AttachEntry(m_ParentHandle, m_Handle, m_Index); in Undo() 137 m_Scope.RemoveTopLevelSeqEntry(tse); in Do()
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H A D | prefetch_actions.cpp | 50 if ( m_Scope.IsNull() ) { in GetScope() 51 m_Scope.Set(new CScope(m_BaseScope->GetObjectManager())); in GetScope() 52 (*m_Scope).AddScope(*m_BaseScope); in GetScope() 54 return m_Scope; in GetScope() 323 : m_Scope(scope), in CPrefetchBioseqActionSource() 331 : m_Scope(scope), in CPrefetchBioseqActionSource() 342 ret.Reset(new CPrefetchBioseq(m_Scope, id)); in GetNextAction() 351 : m_Scope(scope), in CPrefetchFeat_CIActionSource() 361 : m_Scope(scope), in CPrefetchFeat_CIActionSource() 373 ret.Reset(new CPrefetchFeat_CI(m_Scope, id, in GetNextAction()
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/dports/audio/spiralsynthmodular/spiralmodular-0.2.2/SpiralSound/Plugins/ScopePlugin/ |
H A D | ScopePluginGUI.C | 69 m_Scope = new ScopeWidget(5, 20, 210, 85, "Scope", m_BufSize); 70 m_Scope->color (Info->SCOPE_BG_COLOUR); 71 m_Scope->SetColours (Info->SCOPE_MRK_COLOUR, Info->SCOPE_FG_COLOUR); 107 if (m_GUICH->GetBool ("DataReady")) m_GUICH->GetData ("AudioData", (void*)m_Scope->m_Data); 108 else memset ((void*)m_Scope->m_Data, 0, m_BufSize * sizeof (float)); 109 if (!m_Bypass) m_Scope->redraw(); 118 m_Scope->SetAttenuation (1.0-(o->value())); 127 m_Scope->SetTimeBase (o->value());
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/cobalt/unit_test/ |
H A D | cobalt_unit_test.cpp | 266 static CRef<CScope> m_Scope; member in CMultiAlignerFixture 298 m_Scope.Reset(new CScope(*m_Objmgr)); in x_InitScope() 299 m_Scope->AddDefaults(); in x_InitScope() 358 m_Scope.Reset(); in Finalize() 367 CRef<CScope> CMultiAlignerFixture::m_Scope; member in CMultiAlignerFixture 455 h = m_Scope->GetBioseqHandle(*s.GetId()); in BOOST_FIXTURE_TEST_SUITE() 494 s_MakeBioseqs(seqlocs, m_Scope, bioseqs); in BOOST_AUTO_TEST_CASE() 993 m_Aligner->SetQueries(queries, m_Scope); in BOOST_AUTO_TEST_CASE() 1002 m_Aligner->SetQueries(queries, m_Scope); in BOOST_AUTO_TEST_CASE() 1506 m_Aligner->SetQueries(queries, m_Scope); in BOOST_AUTO_TEST_CASE() [all …]
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/validator/ |
H A D | cdregion_validator.cpp | 215 &m_Scope); in x_ValidateTrans() 352 if (IsDeltaOrFarSeg(m_Feat.GetLocation(), &m_Scope)) { in x_ReportTranslationProblems() 563 result = GetValidatorLocationLabel(*loc, m_Scope); in MapToNTCoords() 1061 m_Scope); in x_ValidateBadMRNAOverlap() 1070 m_Scope); in x_ValidateBadMRNAOverlap() 1079 m_Scope); in x_ValidateBadMRNAOverlap() 1095 m_Scope); in x_ValidateBadMRNAOverlap() 1141 fh = m_Scope.GetSeq_featHandle(m_Feat); in x_HasGoodParent() 1209 mrna_prod = m_Scope.GetBioseqHandle(*mrna_sid); in x_ValidateFarProducts() 1669 if ( GetLength(loc, &m_Scope) <= 5 ) { in x_ValidateProductId() [all …]
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H A D | validatorp.cpp | 254 m_Scope = 0; in Reset() 644 if (m_Scope) { in PostErr() 1583 m_Scope.Reset(scope); in Validate() 1585 if (!m_Scope) { in Validate() 1614 m_Scope.Reset(scope); in Validate() 1616 if (!m_Scope) { in Validate() 1640 if (!m_Scope) { in Validate() 2103 if (m_Scope && CValidator::DoesSeqLocContainDuplicateIntervals(loc, *m_Scope)) { in ValidateSeqLoc() 2147 (m_Scope && CValidator::DoesSeqLocContainAdjacentIntervals(loc, *m_Scope))) { in ValidateSeqLoc() 3006 m_Scope->AddDefaults(); in SetScope() [all …]
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/test/ |
H A D | test_objmgr_mt.cpp | 73 CRef<CScope> m_Scope; member in CTestObjectManager 129 if ( m_Scope ) { in Thread_Run() 132 CTestHelper::TestDataRetrieval(*m_Scope, 0, 0); in Thread_Run() 136 m_Scope->AddTopLevelSeqEntry(*entry1); in Thread_Run() 137 m_Scope->AddTopLevelSeqEntry(*entry2); in Thread_Run() 138 CTestHelper::TestDataRetrieval(*m_Scope, idx, 0); in Thread_Run() 233 m_Scope = new CScope(*m_ObjMgr); in TestApp_Init() 236 m_Scope->AddTopLevelSeqEntry(*entry1); in TestApp_Init() 237 m_Scope->AddTopLevelSeqEntry(*entry2); in TestApp_Init()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/alnmgr/demo/ |
H A D | pairwise_aln_app.cpp | 91 mutable CRef<CScope> m_Scope; member in CPairwiseAlnApp 152 if (!m_Scope) { in GetScope() 156 m_Scope = new CScope(*m_ObjMgr); in GetScope() 157 m_Scope->AddDefaults(); in GetScope() 159 return *m_Scope; in GetScope()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/alnmgr/ |
H A D | seqid_comp.hpp | 67 CSeqIdBioseqHandleComp(CScope& scope) : m_Scope(scope) {} in CSeqIdBioseqHandleComp() 72 CBioseq_Handle l_bioseq_handle = m_Scope.GetBioseqHandle(*left_seq_id); in operator ()() 73 CBioseq_Handle r_bioseq_handle = m_Scope.GetBioseqHandle(*right_seq_id); in operator ()() 89 CScope& m_Scope; member in CSeqIdBioseqHandleComp
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objtools/alnmgr/ |
H A D | seqid_comp.hpp | 67 CSeqIdBioseqHandleComp(CScope& scope) : m_Scope(scope) {} in CSeqIdBioseqHandleComp() 72 CBioseq_Handle l_bioseq_handle = m_Scope.GetBioseqHandle(*left_seq_id); in operator ()() 73 CBioseq_Handle r_bioseq_handle = m_Scope.GetBioseqHandle(*right_seq_id); in operator ()() 89 CScope& m_Scope; member in CSeqIdBioseqHandleComp
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/readers/hgvs/ |
H A D | post_process.hpp | 28 CNormalizeVariant(CScope& scope) : m_Scope(scope) {} in CNormalizeVariant() 33 CScope& m_Scope; member in CNormalizeVariant 45 CValidateVariant(CScope& scope) : m_Scope(scope) {} in CValidateVariant() 56 CScope& m_Scope; member in CValidateVariant
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/util/ |
H A D | collection_score.cpp | 55 CRef<CScope> m_Scope; member in CAlignmentCollectionScore 77 : m_Scope(&scope) in CAlignmentCollectionScore() 83 : m_Scope(new CScope(*CObjectManager::GetInstance())) in CAlignmentCollectionScore() 99 return i->second->Get(const_cast<CScope&>(*m_Scope), coll); in Get() 113 return i->second->Set(const_cast<CScope&>(*m_Scope), coll); in Set() 129 return score->Get(const_cast<CScope&>(*m_Scope), coll); in Get() 144 score->Set(const_cast<CScope&>(*m_Scope), coll); in Set()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/ |
H A D | idmapper_scope.cpp | 45 : m_Scope(&scope) in CIdMapperScope() 53 : m_Scope(&scope) in CIdMapperScope() 61 CBioseq_Handle bh = m_Scope->GetBioseqHandle(focus_idh); in x_Init() 68 CBioseq_Handle itbh = m_Scope->GetBioseqHandle(it.GetRefSeqid()); in x_Init()
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