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Searched refs:m_V_penalty (Results 1 – 7 of 7) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/blast/igblast/
H A Digblast.hpp71 int m_V_penalty; //the mismatch penalty for V gene search member in CIgBlastOptions
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/algo/blast/igblast/
H A Digblast.hpp71 int m_V_penalty; //the mismatch penalty for V gene search member in CIgBlastOptions
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/igblast/
H A Digblastn_app.cpp745 m_opts_hndl->SetOptions().SetMismatchPenalty(m_ig_opts->m_V_penalty); in Run()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/igblast/
H A Digblast.cpp502 int penalty = m_IgOptions->m_V_penalty; in x_SetupVSearch()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/igblast/
H A Digblast.cpp502 int penalty = m_IgOptions->m_V_penalty; in x_SetupVSearch()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/blastinput/
H A Dblast_args.cpp1789 m_IgOptions->m_V_penalty = args[kArgVPenalty].AsInteger(); in ExtractAlgorithmOptions()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/blastinput/
H A Dblast_args.cpp1789 m_IgOptions->m_V_penalty = args[kArgVPenalty].AsInteger(); in ExtractAlgorithmOptions()