Searched refs:m_cds_info (Results 1 – 3 of 3) sorted by relevance
411 m_cds_info = CCDSInfo(); in ClearExons()435 TSignedSeqRange ReadingFrame() const { return m_cds_info.ReadingFrame(); } in ReadingFrame()443 const CCDSInfo& GetCdsInfo() const { return m_cds_info; } in GetCdsInfo()492 double Score() const { return m_cds_info.Score(); } in Score()501 bool HasStart() const { return m_cds_info.HasStart(); } in HasStart()502 bool HasStop () const { return m_cds_info.HasStop (); } in HasStop()527 bool OpenCds() const { return m_cds_info.OpenCds(); } // "optimal" CDS is not internal in OpenCds()528 …bool PStop(bool includeall = true) const { return m_cds_info.PStop(includeall); } // has prematur… in PStop()530 …bool ConfirmedStart() const { return m_cds_info.ConfirmedStart(); } // start is confirmed by prot… in ConfirmedStart()531 …bool ConfirmedStop() const { return m_cds_info.ConfirmedStop(); } // stop is confirmed by protein… in ConfirmedStop()[all …]
246 const CCDSInfo* m_cds_info; member1701 const CCDSInfo& cinfoi = *mi->m_cds_info; in MarkUnwantedCopiesForChain()1845 if (ap->m_cds_info->Score() == bp->m_cds_info->Score()) in operator ()()1848 return (ap->m_cds_info->Score() > bp->m_cds_info->Score()); in operator ()()1892 mbr.m_cds_info = &cds; in InsertMemberCopyWithCds()1916 mbr.m_cds_info = &algn.GetCdsInfo(); in InsertMember()2313 const CCDSInfo& ai_cds_info = *mi.m_cds_info; in CanIncludeJinI()2317 const CCDSInfo& aj_cds_info = *mj.m_cds_info; in CanIncludeJinI()2507 const CCDSInfo& ai_cds_info = *mi.m_cds_info; in LRCanChainItoJ()2511 const CCDSInfo& aj_cds_info = *mj.m_cds_info; in LRCanChainItoJ()[all …]
266 m_cds_info.Remap(mapper); in Remap()725 m_cds_info = cds_info; in SetCdsInfo()731 m_cds_info = a.m_cds_info; in SetCdsInfo()737 CombineCdsInfo(a.m_cds_info, ensure_cds_invariant); in CombineCdsInfo()746 m_cds_info.CombineWith(cds_info); in CombineCdsInfo()761 m_cds_info.Cut(cds_hole); in CutExons()843 m_cds_info.Clip(cds_clip_limits); in Clip()