Searched refs:m_contig (Results 1 – 7 of 7) sorted by relevance
/dports/math/libflame/libflame-5.2.0/src/base/flamec/blis/util/ |
H A D | bl1_create_contigm.c | 15 int m_contig, n_contig; in bl1_screate_contigm() local 20 m_contig = m; in bl1_screate_contigm() 40 m_contig, in bl1_screate_contigm() 49 int m_contig, n_contig; in bl1_dcreate_contigm() local 54 m_contig = m; in bl1_dcreate_contigm() 74 m_contig, in bl1_dcreate_contigm() 83 int m_contig, n_contig; in bl1_ccreate_contigm() local 88 m_contig = m; in bl1_ccreate_contigm() 108 m_contig, in bl1_ccreate_contigm() 117 int m_contig, n_contig; in bl1_zcreate_contigm() local [all …]
|
H A D | bl1_create_contigmr.c | 15 int m_contig, n_contig; in bl1_screate_contigmr() local 20 m_contig = m; in bl1_screate_contigmr() 38 m_contig, in bl1_screate_contigmr() 47 int m_contig, n_contig; in bl1_dcreate_contigmr() local 52 m_contig = m; in bl1_dcreate_contigmr() 70 m_contig, in bl1_dcreate_contigmr() 79 int m_contig, n_contig; in bl1_ccreate_contigmr() local 84 m_contig = m; in bl1_ccreate_contigmr() 102 m_contig, in bl1_ccreate_contigmr() 111 int m_contig, n_contig; in bl1_zcreate_contigmr() local [all …]
|
H A D | bl1_create_contigmt.c | 15 int m_contig, n_contig; in bl1_screate_contigmt() local 24 m_contig = m; in bl1_screate_contigmt() 44 m_contig, in bl1_screate_contigmt() 53 int m_contig, n_contig; in bl1_dcreate_contigmt() local 62 m_contig = m; in bl1_dcreate_contigmt() 82 m_contig, in bl1_dcreate_contigmt() 91 int m_contig, n_contig; in bl1_ccreate_contigmt() local 100 m_contig = m; in bl1_ccreate_contigmt() 120 m_contig, in bl1_ccreate_contigmt() 129 int m_contig, n_contig; in bl1_zcreate_contigmt() local [all …]
|
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/ |
H A D | aligncollapser.cpp | 269 m_contig.Init(sv, from, to); in InitContig() 691 while(g > glim+1 && t > tlim+1 && transcript[t-1] == m_contig[g-1]) { in CleanSelfTranscript() 706 while(g < glim-1 && t < tlim-1 && transcript[t+1] == m_contig[g+1]) { in CleanSelfTranscript() 741 gseq.push_back(m_contig[gp++]); in CleanSelfTranscript() 749 gseq += m_contig.substr(gp,indl->Len()); in CleanSelfTranscript() 869 if(m_contig[p] == splice[0] && m_contig[p+1] == splice[1]) { in CleanSelfTranscript() 902 if(m_contig[p-1] == splice[0] && m_contig[p] == splice[1]) { in CleanSelfTranscript() 1407 m_contig[indl->Loc()] = tolower(m_contig[indl->Loc()]); in FilterAlignments() 1408 m_contig[indl->Loc()-1] = tolower(m_contig[indl->Loc()]-1); in FilterAlignments() 1411 m_contig[p] = tolower(m_contig[p]); in FilterAlignments() [all …]
|
H A D | gnomon_model.cpp | 1455 contig_stream_state.slot(s) = c.m_contig; return s; in operator <<() 1459 c.m_contig = contig_stream_state.slot(is); return is; in operator >>()
|
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/ |
H A D | gnomon_model.hpp | 769 const string& m_contig; member 770 explicit setcontig(const string& cntg) : m_contig(cntg) {} in setcontig() 773 string& m_contig; member 774 explicit getcontig(string& cntg) : m_contig(cntg) {} in getcontig()
|
H A D | aligncollapser.hpp | 222 CPartialString m_contig; member in CAlignCollapser
|