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Searched refs:m_contig (Results 1 – 7 of 7) sorted by relevance

/dports/math/libflame/libflame-5.2.0/src/base/flamec/blis/util/
H A Dbl1_create_contigm.c15 int m_contig, n_contig; in bl1_screate_contigm() local
20 m_contig = m; in bl1_screate_contigm()
40 m_contig, in bl1_screate_contigm()
49 int m_contig, n_contig; in bl1_dcreate_contigm() local
54 m_contig = m; in bl1_dcreate_contigm()
74 m_contig, in bl1_dcreate_contigm()
83 int m_contig, n_contig; in bl1_ccreate_contigm() local
88 m_contig = m; in bl1_ccreate_contigm()
108 m_contig, in bl1_ccreate_contigm()
117 int m_contig, n_contig; in bl1_zcreate_contigm() local
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H A Dbl1_create_contigmr.c15 int m_contig, n_contig; in bl1_screate_contigmr() local
20 m_contig = m; in bl1_screate_contigmr()
38 m_contig, in bl1_screate_contigmr()
47 int m_contig, n_contig; in bl1_dcreate_contigmr() local
52 m_contig = m; in bl1_dcreate_contigmr()
70 m_contig, in bl1_dcreate_contigmr()
79 int m_contig, n_contig; in bl1_ccreate_contigmr() local
84 m_contig = m; in bl1_ccreate_contigmr()
102 m_contig, in bl1_ccreate_contigmr()
111 int m_contig, n_contig; in bl1_zcreate_contigmr() local
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H A Dbl1_create_contigmt.c15 int m_contig, n_contig; in bl1_screate_contigmt() local
24 m_contig = m; in bl1_screate_contigmt()
44 m_contig, in bl1_screate_contigmt()
53 int m_contig, n_contig; in bl1_dcreate_contigmt() local
62 m_contig = m; in bl1_dcreate_contigmt()
82 m_contig, in bl1_dcreate_contigmt()
91 int m_contig, n_contig; in bl1_ccreate_contigmt() local
100 m_contig = m; in bl1_ccreate_contigmt()
120 m_contig, in bl1_ccreate_contigmt()
129 int m_contig, n_contig; in bl1_zcreate_contigmt() local
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/
H A Daligncollapser.cpp269 m_contig.Init(sv, from, to); in InitContig()
691 while(g > glim+1 && t > tlim+1 && transcript[t-1] == m_contig[g-1]) { in CleanSelfTranscript()
706 while(g < glim-1 && t < tlim-1 && transcript[t+1] == m_contig[g+1]) { in CleanSelfTranscript()
741 gseq.push_back(m_contig[gp++]); in CleanSelfTranscript()
749 gseq += m_contig.substr(gp,indl->Len()); in CleanSelfTranscript()
869 if(m_contig[p] == splice[0] && m_contig[p+1] == splice[1]) { in CleanSelfTranscript()
902 if(m_contig[p-1] == splice[0] && m_contig[p] == splice[1]) { in CleanSelfTranscript()
1407 m_contig[indl->Loc()] = tolower(m_contig[indl->Loc()]); in FilterAlignments()
1408 m_contig[indl->Loc()-1] = tolower(m_contig[indl->Loc()]-1); in FilterAlignments()
1411 m_contig[p] = tolower(m_contig[p]); in FilterAlignments()
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H A Dgnomon_model.cpp1455 contig_stream_state.slot(s) = c.m_contig; return s; in operator <<()
1459 c.m_contig = contig_stream_state.slot(is); return is; in operator >>()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/
H A Dgnomon_model.hpp769 const string& m_contig; member
770 explicit setcontig(const string& cntg) : m_contig(cntg) {} in setcontig()
773 string& m_contig; member
774 explicit getcontig(string& cntg) : m_contig(cntg) {} in getcontig()
H A Daligncollapser.hpp222 CPartialString m_contig; member in CAlignCollapser