Searched refs:m_fshifts (Results 1 – 5 of 5) sorted by relevance
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/ |
| H A D | score.hpp | 77 const TInDels& SeqTInDels() const { return m_fshifts; } in SeqTInDels()
107 TInDels m_fshifts; member in CSeqScores
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| H A D | gnomon_model.cpp | 880 TInDels::const_iterator indl = m_fshifts.begin(); in RemoveExtraFShifts()
882 …::TExons::const_iterator e = Exons().begin(); e != Exons().end() && indl != m_fshifts.end(); ++e) { in RemoveExtraFShifts()
889 …if(indl != m_fshifts.end() && indl->Loc() < e->GetFrom()) { … in RemoveExtraFShifts()
909 m_fshifts = indels; in RemoveExtraFShifts()
917 ITERATE(TInDels, i, m_fshifts) { in FrameShifts()
1263 m_fshifts.insert(m_fshifts.end(),align.m_fshifts.begin(),align.m_fshifts.end()); in Extend()
1264 if(!m_fshifts.empty()) { in Extend()
1265 sort(m_fshifts.begin(),m_fshifts.end()); in Extend()
1266 m_fshifts.erase( unique(m_fshifts.begin(),m_fshifts.end()), m_fshifts.end() ); in Extend()
1269 ITERATE(TInDels, indl, m_fshifts) { in Extend()
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| H A D | score.cpp | 168 m_fshifts.insert(m_fshifts.end(),align.FrameShifts().begin(),align.FrameShifts().end()); in ConstructSequenceAndMaps()
170 sort(m_fshifts.begin(),m_fshifts.end()); in ConstructSequenceAndMaps()
171 m_map = CAlignMap(m_chunk_start, m_chunk_stop, m_fshifts.begin(), m_fshifts.end()); in ConstructSequenceAndMaps()
235 …m_align_list(cls), m_fshifts(initial_fshifts), m_map(from,to), m_chunk_start(from), m_chunk_stop(t… in CSeqScores()
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| H A D | chainer.cpp | 6488 TInDels m_fshifts; member
6506 algn_fclusters.back().m_fshifts.push_back(*fi++); in AddIfCompatible()
6514 ITERATE(TInDels, fi, glob_cluster->m_fshifts) in AddIfCompatible()
6515 …if (find(exon_cluster->m_fshifts.begin(),exon_cluster->m_fshifts.end(),*fi) == exon_cluster->m_fsh… in AddIfCompatible()
6518 ITERATE(TInDels, fi, exon_cluster->m_fshifts) in AddIfCompatible()
6519 …if (find(glob_cluster->m_fshifts.begin(),glob_cluster->m_fshifts.end(),*fi) == glob_cluster->m_fsh… in AddIfCompatible()
6528 …exon_cluster->m_fshifts.insert(exon_cluster->m_fshifts.end(),glob_cluster->m_fshifts.begin(),glob_… in AddIfCompatible()
6531 uniq(exon_cluster->m_fshifts); in AddIfCompatible()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/ |
| H A D | gnomon_model.hpp | 409 m_fshifts.clear(); in ClearExons()
535 TInDels& FrameShifts() { return m_fshifts; } in FrameShifts()
536 const TInDels& FrameShifts() const { return m_fshifts; } in FrameShifts()
600 TInDels m_fshifts; member in CGeneModel
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