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Searched refs:m_indelv (Results 1 – 2 of 2) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/
H A Dvariations.hpp13 …CLiteIndel(int loc, int len, const string& indelv = "") : m_loc(loc), m_len(len), m_indelv(indelv)… in CLiteIndel()
14 …CLiteIndel(const CInDelInfo& indl) : m_loc(indl.Loc()), m_len(indl.Len()), m_indelv(indl.IsDeletio… in CLiteIndel()
17 const string& GetInDelV() const { return m_indelv; } in GetInDelV()
18 bool IsInsertion() const { return m_indelv.empty(); } in IsInsertion()
19 bool IsDeletion() const { return !m_indelv.empty(); } in IsDeletion()
29 return m_indelv < fsi.m_indelv; in operator <()
36 string m_indelv; member in CLiteIndel
H A Dgnomon_model.hpp135 return m_indelv < fsi.m_indelv; in operator <()
139 string GetInDelV() const { return m_indelv; } in GetInDelV()
152 m_indelv = v; in Init()
154 _ASSERT(m_indelv.empty() || (int)m_indelv.length() == len); in Init()
155 _ASSERT(m_indelv.empty() || m_type != eIns); in Init()
157 m_indelv.insert( m_indelv.end(), Len(),'N'); in Init()
165 string m_indelv; member in CInDelInfo