Searched refs:m_notbridgeable_gaps_len (Results 1 – 3 of 3) sorted by relevance
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/ |
| H A D | annot.cpp | 89 …->Run(test_align, false, false, false, false, mpp, nonconsensp, m_notbridgeable_gaps_len, m_insert… in ExtendJustThisChain()
131 …leftwall, rightwall, leftanchor, rightanchor, mpp, nonconsensp, m_notbridgeable_gaps_len, m_insert… in TryWithoutObviouslyBadAlignments()
150 …leftwall, rightwall, leftanchor, rightanchor, mpp, nonconsensp, m_notbridgeable_gaps_len, m_insert… in TryToEliminateOneAlignment()
181 …leftwall, rightwall, leftanchor, rightanchor, mpp, nonconsensp, m_notbridgeable_gaps_len, m_insert… in TryToEliminateAlignmentsFromTail()
241 …leftwall, rightwall, leftanchor, rightanchor, mpp, nonconsensp, m_notbridgeable_gaps_len, m_insert… in Predict()
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| H A D | chainer.cpp | 7899 m_notbridgeable_gaps_len.clear(); in SetGenomic()
7907 m_notbridgeable_gaps_len.clear(); in SetGenomic()
7991 TIntMap::iterator current_gap = m_notbridgeable_gaps_len.end(); in SetGenomic()
7998 if(current_gap == m_notbridgeable_gaps_len.end()) in SetGenomic()
7999 current_gap = m_notbridgeable_gaps_len.insert(TIntMap::value_type(i,1)).first; in SetGenomic()
8003 current_gap = m_notbridgeable_gaps_len.end(); in SetGenomic()
8153 ITERATE(TIntMap, ig, m_notbridgeable_gaps_len) { in SetGenomic()
8158 m_notbridgeable_gaps_len = notbridgeable_gaps_len; in SetGenomic()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/ |
| H A D | chainer.hpp | 163 TIntMap m_notbridgeable_gaps_len; // don't allow introns to cross this member in CGnomonAnnotator_Base
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