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Searched refs:m_reading_frame (Results 1 – 3 of 3) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/
H A Dgnomon_model.cpp274 m_reading_frame==a.m_reading_frame && in operator ==()
378 m_reading_frame = r; in SetReadingFrame()
416 if (Precede(m_reading_frame,r)) in SetStop()
444 if (p <= m_reading_frame.GetFrom()) in Set5PrimeCdsLimit()
474 if(m_reading_frame.NotEmpty()) in Remap()
475 m_reading_frame = mapper(m_reading_frame, true); in Remap()
493 if (m_reading_frame.Empty()) { in CombineWith()
502 new_cds_info.m_reading_frame += another_cds_info.m_reading_frame; in CombineWith()
561 m_reading_frame &= limits; in Clip()
563 if (m_reading_frame.Empty()) { in Clip()
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H A Dchainer.cpp4285 TSignedSeqRange m_reading_frame; member
4416 sl.m_reading_frame = ReadingFrame()&sl.m_range; in CalculateSupportAndWeightFromMembers()
4468 sl.m_reading_frame = sl.m_range&ReadingFrame(); in CalculateSupportAndWeightFromMembers()
4481 sl.m_reading_frame = sl.m_range&ReadingFrame(); in CalculateSupportAndWeightFromMembers()
4507 … Include(s,sli.m_range.GetFrom())) && !Include(slj.m_reading_frame,s) && !Include(sli.m_reading_fr… in CalculateSupportAndWeightFromMembers()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/
H A Dgnomon_model.hpp235 TSignedSeqRange ReadingFrame() const { return m_reading_frame; } in ReadingFrame()
343 TSignedSeqRange m_reading_frame; member in CCDSInfo