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Searched refs:m_totalSites (Results 1 – 3 of 3) sorted by relevance

/dports/biology/lamarc/lamarc-2.1.8/src/tree/
H A Drectree.cpp469 transmittedsites.begin()->second = m_totalSites; in RecombineActive()
473 rangepair transmit2(rec + 1, m_totalSites); in RecombineActive()
525 transmit.second = m_totalSites; in RecombineInactive()
552 transmit.second = m_totalSites; in RecombineInactive()
635 … TBranch_ptr pTip = m_timeList.CreateTip(tipdata, cells, movingcells, m_totalSites, diseasesites); in CreateTip()
645 …TBranch_ptr pTip = m_timeList.CreateTip(tipdata, cells, movingcells, m_totalSites, diseasesites, l… in CreateTip()
716 breakpt.insert(m_totalSites); in GetBreakpoints()
735 DoubleVec1d zeroes(m_totalSites, 0.0); in GetMapSummary()
824 DoubleVec1d datalikes(m_totalSites); in CalculateDataLikesForFloatingLocus()
857 newbreakpoints.insert(m_totalSites); // To close out the final range. in IgnoreDisallowedSubTrees()
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H A Dtree.cpp43 m_totalSites(0), in Tree()
69 m_totalSites(tree.m_totalSites) in Tree()
121 m_totalSites = tree->m_totalSites; in CopyTips()
183 … TBranch_ptr pTip = m_timeList.CreateTip(tipdata, cells, movingcells, m_totalSites, diseasesites); in CreateTip()
194 TBranch_ptr pTip = m_timeList.CreateTip(tipdata, cells, movingcells, m_totalSites, diseasesites, in CreateTip()
217 m_totalSites = 0; in SetLocusVec()
221 if (locit->GetSiteSpan().second > m_totalSites) in SetLocusVec()
222 m_totalSites = locit->GetSiteSpan().second; in SetLocusVec()
1034 locus.SimulateData(*this, m_totalSites); in SimulateDataIfNeeded()
H A Dtree.h81 long m_totalSites; // span of entire region, including gaps variable