Searched refs:m_totalSites (Results 1 – 3 of 3) sorted by relevance
/dports/biology/lamarc/lamarc-2.1.8/src/tree/ |
H A D | rectree.cpp | 469 transmittedsites.begin()->second = m_totalSites; in RecombineActive() 473 rangepair transmit2(rec + 1, m_totalSites); in RecombineActive() 525 transmit.second = m_totalSites; in RecombineInactive() 552 transmit.second = m_totalSites; in RecombineInactive() 635 … TBranch_ptr pTip = m_timeList.CreateTip(tipdata, cells, movingcells, m_totalSites, diseasesites); in CreateTip() 645 …TBranch_ptr pTip = m_timeList.CreateTip(tipdata, cells, movingcells, m_totalSites, diseasesites, l… in CreateTip() 716 breakpt.insert(m_totalSites); in GetBreakpoints() 735 DoubleVec1d zeroes(m_totalSites, 0.0); in GetMapSummary() 824 DoubleVec1d datalikes(m_totalSites); in CalculateDataLikesForFloatingLocus() 857 newbreakpoints.insert(m_totalSites); // To close out the final range. in IgnoreDisallowedSubTrees() [all …]
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H A D | tree.cpp | 43 m_totalSites(0), in Tree() 69 m_totalSites(tree.m_totalSites) in Tree() 121 m_totalSites = tree->m_totalSites; in CopyTips() 183 … TBranch_ptr pTip = m_timeList.CreateTip(tipdata, cells, movingcells, m_totalSites, diseasesites); in CreateTip() 194 TBranch_ptr pTip = m_timeList.CreateTip(tipdata, cells, movingcells, m_totalSites, diseasesites, in CreateTip() 217 m_totalSites = 0; in SetLocusVec() 221 if (locit->GetSiteSpan().second > m_totalSites) in SetLocusVec() 222 m_totalSites = locit->GetSiteSpan().second; in SetLocusVec() 1034 locus.SimulateData(*this, m_totalSites); in SimulateDataIfNeeded()
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H A D | tree.h | 81 long m_totalSites; // span of entire region, including gaps variable
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